Factsheet for Bra006585.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013248.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	Bra013248.1-P	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88834	Canola	cytosol	76.81	99.35
AT5G20910.1	Thale cress	nucleus	67.83	87.74
Bra017440.1-P	Field mustard	cytosol	28.68	82.14
HORVU6Hr1G042090.3	Barley	cytosol	19.7	65.29
VIT_04s0008g02310.t01	Wine grape	cytosol	14.21	64.77
KRH05327	Soybean	cytosol, mitochondrion, nucleus	49.13	62.94
Solyc08g067290.2.1	Tomato	cytosol	47.63	61.22
PGSC0003DMT400019033	Potato	cytosol	47.38	61.09
VIT_04s0008g02290.t01	Wine grape	cytosol	44.14	60.41
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	43.39	52.73
EER98955	Sorghum	cytosol	41.15	50.93
Zm00001d005795_P002	Maize	cytosol	40.65	50.31
TraesCS5B01G214500.2	Wheat	cytosol	39.65	49.23
TraesCS5A01G216000.1	Wheat	cytosol	39.4	48.92
TraesCS5D01G223800.1	Wheat	cytosol	39.4	48.92
HORVU5Hr1G062970.1	Barley	cytosol	39.15	48.61
KRH15708	Soybean	cytosol, nucleus, plastid	39.15	47.01
Os09t0434200-01	Rice	mitochondrion	38.15	45.54
GSMUA_Achr4P09670_001	Banana	mitochondrion	25.19	40.24
Bra004047.1-P	Field mustard	cytosol	5.99	19.35
Bra033953.1-P	Field mustard	mitochondrion	12.97	14.21
Bra004287.1-P	Field mustard	mitochondrion	11.22	12.2

Protein Annotations

EnsemblPlants:Bra006585.1	EnsemblPlants:Bra006585.1-P	EnsemblPlantsGene:Bra006585	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089
SEG:seg	SUPFAM:SSF57850	UniParc:UPI00025400B7	UniProt:M4CQU4	MapMan:11.1.2.3	:

Description

AT5G20910 (E=1e-125) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:-:4166191..4168715

Molecular Weight (calculated)

44454.1 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.294

Length

401 amino acids

Sequence
(BLAST)

001: MDVEVVGDLP TSPGLTKPEL ALRQGIEAAV FITLGASTMM IGDPTWSLDF GLGGSFAVSQ HLTVTRGVKD TLSFSNPLNP ILLISLRRKA LMEAASLSEE
101: SLKLELDDLQ KQLNKKLRFE ASVRSIHSLL RDRYASSSPS LRKQFYTVVS RVATVLKTRY TATGFWVAGL SLFEEAERLV SDTSEKKHLK SCIEQAKEQL
201: TEVDIQPTES SQGYLFEGHL TVDREPPQPQ WLVQQNLMSA FSSIVAGESS NAAAAAVGNV LGETANLMQE LINGLDSIIP EILEDGGPPR APPASKEVVE
301: KLPVIVFSEE MLKTLGADVE CCIRKENLVI GDKMQELPCK HTFHPPCLKP WLDEHNSCPI CRHELPTDDQ KYENWKEREK EAEEERKGAE NAVRGGEYMY
401: V

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.