Factsheet for Bra033953.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12699	Canola	mitochondrion	99.45	99.45
Bra004047.1-P	Field mustard	cytosol	23.22	68.55
AT1G68180.1	Thale cress	mitochondrion	38.8	60.43
Bra004287.1-P	Field mustard	mitochondrion	44.54	44.17
Bra017440.1-P	Field mustard	cytosol	9.84	25.71
Bra006585.1-P	Field mustard	cytosol	14.21	12.97

Protein Annotations

Gene3D:1.50.40.10	Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra033953	EnsemblPlants:Bra033953.1	EnsemblPlants:Bra033953.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR011016	InterPro:IPR013083	InterPro:IPR018108	InterPro:IPR023395
UniProt:M4EYR1	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PFAM:PF13639	PFscan:PS50089
PANTHER:PTHR44290	SMART:SM00184	SMART:SM00744	SUPFAM:SSF103506	SUPFAM:SSF57850	UniParc:UPI00025462B6
InterPro:Znf_RING	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT1G68180 (E=1e-091) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:+:10645076..10647752

Molecular Weight (calculated)

41816.5 Da

IEP (calculated)

7.267

GRAVY (calculated)

-0.575

Length

366 amino acids

Sequence
(BLAST)

001: MTSEYRPRII VNGTRRTRTF HYFYCRHCSR TIRLQNYGLY GPLCPLCSRE INLHDELDIM RLNRPYWDTD TDWITLHLVN STRSNRFNHE LVNTDDEFAD
101: VLPNERVGPP PASPSAIEAV NTVTVSEENL AKEMVCAICK EEFEVGEEGK ELKCLHLYHP SCIVSWLNIH NTCPICRFEV NLGVSHCHVD GEESHNLGNG
201: RSNRIRTREE TRKHEINRLL DEMLSLEKQE PESSSSEEAQ AVTPWVVSDS VERLTSPPWR LLRTQGSSSN GQNYRMSTRS GRPFSAICWS TLEPVKPRAG
301: SIIGANFTAG FVAGAATCPL DVAKTRRQIE KDRDRAMKMT TRQTLAEIWR YELAKGNSFL VDISKK

Best Arabidopsis Sequence Match ( AT1G68180.1 )
(BLAST)

001: MTSAYRPRVI VNGTRRTRTF HYFYCRHCSR TIRLRSFGLY GPICPFCSRE INLHDELDIM RPSRPYWDSD TDWITLHLIN EPRSNRFNHD DLVYNTDEEF
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS

Arabidopsis Description

RING/U-box superfamily protein [Source:TAIR;Acc:AT1G68180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.