Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 6
- cytosol 1
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01893 | Canola | mitochondrion | 65.53 | 62.1 |
| CDY04206 | Canola | cytosol | 39.15 | 60.93 |
| Bra004047.1-P | Field mustard | cytosol | 31.91 | 60.48 |
| CDY07397 | Canola | cytosol | 31.91 | 60.48 |
| CDX81498 | Canola | mitochondrion | 64.26 | 60.4 |
| Bra004287.1-P | Field mustard | mitochondrion | 65.96 | 42.01 |
| CDX96042 | Canola | mitochondrion | 65.96 | 42.01 |
| Bra033953.1-P | Field mustard | mitochondrion | 60.43 | 38.8 |
| CDY12699 | Canola | mitochondrion | 60.43 | 38.8 |
| AT5G20910.1 | Thale cress | nucleus | 19.15 | 14.52 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:843146 | UniProt:A0A178W7X2 | ProteinID:AEE34760.2 | ArrayExpress:AT1G68180 |
| EnsemblPlantsGene:AT1G68180 | RefSeq:AT1G68180 | TAIR:AT1G68180 | RefSeq:AT1G68180-TAIR-G | EnsemblPlants:AT1G68180.1 | TAIR:AT1G68180.1 |
| UniProt:F4HVM4 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR001841 |
| InterPro:IPR011016 | InterPro:IPR013083 | RefSeq:NP_001319343.1 | ProteinID:OAP13473.1 | PFAM:PF13639 | PFscan:PS50089 |
| PANTHER:PTHR44290 | SMART:SM00184 | SMART:SM00744 | SUPFAM:SSF57850 | UniParc:UPI0007DF1A3E | InterPro:Znf_RING |
| InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT1G68180]
Coordinates
chr1:+:25554721..25556097
Molecular Weight (calculated)
27420.5 Da
IEP (calculated)
6.229
GRAVY (calculated)
-0.397
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSAYRPRVI VNGTRRTRTF HYFYCRHCSR TIRLRSFGLY GPICPFCSRE INLHDELDIM RPSRPYWDSD TDWITLHLIN EPRSNRFNHD DLVYNTDEEF
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.