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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • cytosol 1
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07397 Canola cytosol 34.4 69.35
CDY01893 Canola mitochondrion 68.0 68.55
AT1G68180.1 Thale cress mitochondrion 60.4 64.26
CDY04206 Canola cytosol 34.4 56.95
CDY12699 Canola mitochondrion 74.4 50.82
CDX96042 Canola mitochondrion 63.6 43.09
CDY04094 Canola cytosol 12.4 22.14
CDX70951 Canola cytosol 20.0 16.23
CDX88834 Canola cytosol 19.2 15.48
CDX87889 Canola cytosol 13.2 13.47
Protein Annotations
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-Gene3D:3.30.40.10MapMan:35.2GO:A0A078D2F5
EnsemblPlants:CDX81498ProteinID:CDX81498ProteinID:CDX81498.1GO:GO:0003674GO:GO:0005488GO:GO:0008270
EnsemblPlantsGene:GSBRNA2T00135119001InterPro:IPR001841InterPro:IPR011016InterPro:IPR013083PFAM:PF13639PFscan:PS50089
PANTHER:PTHR44290SMART:SM00184SMART:SM00744SUPFAM:SSF57850UniParc:UPI0004EF3BE0InterPro:Znf_RING
InterPro:Znf_RING-CHInterPro:Znf_RING/FYVE/PHDSEG:seg:::
Description
BnaC02g18020D
Coordinates
chrLK031825:+:311721..312473
Molecular Weight (calculated)
28896.7 Da
IEP (calculated)
7.482
GRAVY (calculated)
-0.314
Length
250 amino acids
Sequence
(BLAST)
001: MTSEYRPRII VNGTRRTRTF HYFYCRHCSR TIRLRNYGLY GPICPLCSRE INLHDELDIM RLNRPYWDTD TDWITLHLVN STRSNRHNHE LVNTDDEFAD
101: VLPNERVGPP PASPSAIEAV NTVTISEENL AKEKVCAICK EEFEVGEEGK ELKCLHLYHP SCIVSWLNIH NTCPICRFAV NLGVSHSHVD GEGSNNLGNG
201: RSNRIRTRVC SLWPLRMMFD WVHNLLGKIP PPDLIFMAIV LCFNVFNYKV
Best Arabidopsis Sequence Match ( AT1G68180.1 )
(BLAST)
001: MTSAYRPRVI VNGTRRTRTF HYFYCRHCSR TIRLRSFGLY GPICPFCSRE INLHDELDIM RPSRPYWDSD TDWITLHLIN EPRSNRFNHD DLVYNTDEEF
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
Arabidopsis Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT1G68180]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.