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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 6
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX81498 Canola mitochondrion 68.55 68.0
AT1G68180.1 Thale cress mitochondrion 62.1 65.53
CDY07397 Canola cytosol 32.66 65.32
CDY04206 Canola cytosol 37.1 60.93
CDX96042 Canola mitochondrion 83.06 55.83
CDY12699 Canola mitochondrion 62.9 42.62
CDY04094 Canola cytosol 12.5 22.14
CDX70951 Canola cytosol 18.95 15.26
CDX88834 Canola cytosol 18.15 14.52
CDX87889 Canola cytosol 12.5 12.65
Protein Annotations
EnsemblPlants:CDY01893EnsemblPlantsGene:GSBRNA2T00113086001Gene3D:3.30.40.10GO:A0A078EQS6InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR44290PFAM:PF13639PFscan:PS50089ProteinID:CDY01893
ProteinID:CDY01893.1SEG:segSMART:SM00184SUPFAM:SSF57850UniParc:UPI0004EF1494MapMan:35.2
Description
BnaC06g29330D
Coordinates
chrLK031929:+:1068188..1068934
Molecular Weight (calculated)
28716.3 Da
IEP (calculated)
6.772
GRAVY (calculated)
-0.292
Length
248 amino acids
Sequence
(BLAST)
001: MASNPYRPRV IVNGTRRTRT FHYFYCRHCS RTIRLRNYGL YGSLCPFCSR EINLHDELDI MRLNRSFWDT DTDWITLHLI NSSRSNRFNH ELVNDTDDDF
101: VDAMPSERVG PPPASLSAIE DLKTVTITEE DLAKEKVCAI CKEEFEVGEE GKELKCLHLY HTSCIVSWLN IHNTCPICRF EVRLGVSGSD IDGGGSRHVD
201: HDRSNRSGTR VCSLWPLRMM FDWVHSLFVK IPPPDLTFMA ILLCFHVF
Best Arabidopsis Sequence Match ( AT1G68180.1 )
(BLAST)
001: MTSAYRPRVI VNGTRRTRTF HYFYCRHCSR TIRLRSFGLY GPICPFCSRE INLHDELDIM RPSRPYWDSD TDWITLHLIN EPRSNRFNHD DLVYNTDEEF
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
Arabidopsis Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT1G68180]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.