CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033953.1-P	Field mustard	mitochondrion	99.45	99.45
CDX81498	Canola	mitochondrion	50.82	74.4
CDY07397	Canola	cytosol	23.22	68.55
CDY01893	Canola	mitochondrion	42.62	62.9
AT1G68180.1	Thale cress	mitochondrion	38.8	60.43
CDY04206	Canola	cytosol	22.68	54.97
CDX96042	Canola	mitochondrion	44.26	43.9
CDY04094	Canola	cytosol	9.84	25.71
CDX70951	Canola	cytosol	15.03	17.86
CDX88834	Canola	cytosol	14.48	17.1
CDX87889	Canola	cytosol	9.84	14.69

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:1.50.40.10	Gene3D:3.30.40.10	MapMan:35.1
GO:A0A078FI79	UniProt:A0A078FI79	EnsemblPlants:CDY12699	ProteinID:CDY12699	ProteinID:CDY12699.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00070228001	InterPro:IPR001841	InterPro:IPR011016	InterPro:IPR013083	InterPro:IPR018108	InterPro:IPR023395
InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44290
SMART:SM00184	SMART:SM00744	SUPFAM:SSF103506	SUPFAM:SSF57850	UniParc:UPI0004EDEF90	InterPro:Znf_RING
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaA02g13670DBnaA02g13670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FI79]

Coordinates

chrLK032025:+:802954..805606

Molecular Weight (calculated)

41838.5 Da

IEP (calculated)

7.294

GRAVY (calculated)

-0.572

Length

366 amino acids

Sequence
(BLAST)

001: MTSEYRPRII VNGTRRTRTF HYFYCRHCSR TIRLQNYGLY GPLCPLCSRE INLHDELDIM RLNRPYWDTD TDWITLHLVN STRSNRFNHE LVNTDDEFAD
101: VLPNERVGPP PASPSAIEAV NTVTVSEENL AKEMVCAICK EEFEVGEEGK ELKCLHLYHP SCIVSWLNIH NTCPICRFEV NLGVSHCHVD GEESHNLGNG
201: RSNRIRTREE TRKHEINRLL DEMLSLEKQE PESSSSEEAQ AVTPWVVSDS VERLTSPHWR LLRTQGSSSN GQNYRMSTRS GRPFSAICWS TLEPVKPRAG
301: SIIGANFTAG FVAGAATCPL DVAKTRRQIE KDRDRAIKMT TRQTLAEIWR YELAKGNSFL VDISKK

Best Arabidopsis Sequence Match ( AT1G68180.1 )
(BLAST)

001: MTSAYRPRVI VNGTRRTRTF HYFYCRHCSR TIRLRSFGLY GPICPFCSRE INLHDELDIM RPSRPYWDSD TDWITLHLIN EPRSNRFNHD DLVYNTDEEF
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS

Arabidopsis Description

RING/U-box superfamily protein [Source:TAIR;Acc:AT1G68180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.