Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07397 | Canola | cytosol | 32.45 | 39.52 |
| AT1G68180.1 | Thale cress | mitochondrion | 60.93 | 39.15 |
| CDY01893 | Canola | mitochondrion | 60.93 | 37.1 |
| CDX81498 | Canola | mitochondrion | 56.95 | 34.4 |
| CDX96042 | Canola | mitochondrion | 61.59 | 25.2 |
| CDY12699 | Canola | mitochondrion | 54.97 | 22.68 |
| CDY04094 | Canola | cytosol | 18.54 | 20.0 |
| CDX70951 | Canola | cytosol | 23.84 | 11.69 |
| CDX88834 | Canola | cytosol | 23.18 | 11.29 |
| CDX87889 | Canola | cytosol | 14.57 | 8.98 |
Protein Annotations
| EnsemblPlants:CDY04206 | EnsemblPlantsGene:GSBRNA2T00117920001 | Gene3D:3.30.40.10 | GO:A0A078ESJ0 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PFAM:PF13639 | PFscan:PS50089 | ProteinID:CDY04206 |
| ProteinID:CDY04206.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EE4681 | MapMan:35.2 | : |
Description
BnaC06g26090D
Coordinates
chrLK031950:+:141600..142055
Molecular Weight (calculated)
17382.7 Da
IEP (calculated)
5.072
GRAVY (calculated)
-0.610
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPYWELDTD TDTDRQLVNT DEPVDVMPNK RVGQPPASLP AIEAVKTVTI TEEDLGKVKV CAICKEEFEV GEEGKELKCL LLYHPSCIES WLNIHNTCPV
101: CRFEVNLGIS ESNLNGGGSD HVENDRSNRR RNRVRSLWPP LRMMFDWIRN R
101: CRFEVNLGIS ESNLNGGGSD HVENDRSNRR RNRVRSLWPP LRMMFDWIRN R
001: MTSAYRPRVI VNGTRRTRTF HYFYCRHCSR TIRLRSFGLY GPICPFCSRE INLHDELDIM RPSRPYWDSD TDWITLHLIN EPRSNRFNHD DLVYNTDEEF
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
Arabidopsis Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT1G68180]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.