CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93029
CDY15121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	CDX93029	AT3G24650.1	10743655
AT5G20910.1	CDY15121	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88834	Canola	cytosol	96.43	95.81
AT5G20910.1	Thale cress	nucleus	88.64	88.06
CDY04094	Canola	cytosol	37.34	82.14
CDX87889	Canola	cytosol	56.17	70.61
HORVU6Hr1G042090.3	Barley	cytosol	26.95	68.59
VIT_04s0008g02310.t01	Wine grape	cytosol	18.51	64.77
KRH05327	Soybean	cytosol, mitochondrion, nucleus	64.29	63.26
Solyc08g067290.2.1	Tomato	cytosol	63.31	62.5
PGSC0003DMT400019033	Potato	cytosol	62.99	62.38
VIT_04s0008g02290.t01	Wine grape	cytosol	58.77	61.77
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	57.14	53.33
EER98955	Sorghum	cytosol	55.19	52.47
Zm00001d005795_P002	Maize	cytosol	54.55	51.85
TraesCS5B01G214500.2	Wheat	cytosol	52.92	50.46
TraesCS5A01G216000.1	Wheat	cytosol	52.6	50.15
TraesCS5D01G223800.1	Wheat	cytosol	52.6	50.15
HORVU5Hr1G062970.1	Barley	cytosol	52.27	49.85
KRH15708	Soybean	cytosol, nucleus, plastid	50.97	47.01
Os09t0434200-01	Rice	mitochondrion	50.0	45.83
GSMUA_Achr4P09670_001	Banana	mitochondrion	33.77	41.43
CDY04206	Canola	cytosol	11.69	23.84
CDX81498	Canola	mitochondrion	16.23	20.0
CDY07397	Canola	cytosol	7.79	19.35
CDY01893	Canola	mitochondrion	15.26	18.95
CDY12699	Canola	mitochondrion	17.86	15.03
CDX96042	Canola	mitochondrion	15.91	13.28

Protein Annotations

EnsemblPlants:CDX70951	EnsemblPlantsGene:GSBRNA2T00140869001	Gene3D:3.30.40.10	GO:A0A078C1R8	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089
ProteinID:CDX70951	ProteinID:CDX70951.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EF0B9E
MapMan:11.1.2.3	:	:	:	:	:

Description

BnaC03g10350D

Coordinates

chrLK031791:-:2914547..2916516

Molecular Weight (calculated)

34652.1 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.490

Length

308 amino acids

Sequence
(BLAST)

001: MDAASLSEES LKLELDDLQK QLNKKLRFEA SVRSIHSLLR DRYASSSPSL RKQFYTVVSR VATVLKTRYT ATGFWVAGLS LFEEAERLVS DASEKKHLKS
101: CIEQAKEQLT EVDIQPTESS RGYLFEGHLT VDREPPQPQW LVQQNLMSAF SSIVAGESSN ADAVGNVLGE TANLMQELIN GLDSIIPEIL EDGGPPRAPP
201: ASKEVVEKLP VIVFSEEMLK KLGAEVECCI CKENLVVGDK MQELPCKHTF HPPCLKPWLD EHNSCPICRH ELPTDDQKYE SWKEREKEAE EERKGAENAV
301: RGGEYMYV

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.