CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04085
OQU89229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	EES04085	AT3G24650.1	10743655
AT5G20910.1	OQU89229	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005795_P002	Maize	cytosol	93.83	93.83
HORVU6Hr1G042090.3	Barley	cytosol	32.72	87.6
TraesCS5D01G223800.1	Wheat	cytosol	83.95	84.21
TraesCS5B01G214500.2	Wheat	cytosol	83.64	83.9
TraesCS5A01G216000.1	Wheat	cytosol	83.33	83.59
HORVU5Hr1G062970.1	Barley	cytosol	82.41	82.66
Os09t0434200-01	Rice	mitochondrion	77.78	75.0
Bra017440.1-P	Field mustard	cytosol	27.16	62.86
CDY04094	Canola	cytosol	27.16	62.86
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	61.11	60.0
KRH05327	Soybean	cytosol, mitochondrion, nucleus	53.7	55.59
CDX70951	Canola	cytosol	52.47	55.19
Solyc08g067290.2.1	Tomato	cytosol	53.09	55.13
PGSC0003DMT400019033	Potato	cytosol	52.78	54.98
VIT_04s0008g02290.t01	Wine grape	cytosol	49.07	54.27
CDX88834	Canola	cytosol	50.93	53.23
AT5G20910.1	Thale cress	nucleus	50.31	52.58
VIT_04s0008g02310.t01	Wine grape	cytosol	13.89	51.14
GSMUA_Achr4P09670_001	Banana	mitochondrion	36.73	47.41
KRH15708	Soybean	cytosol, nucleus, plastid	45.37	44.01
CDX87889	Canola	cytosol	31.79	42.04
Bra006585.1-P	Field mustard	cytosol	50.93	41.15

Protein Annotations

MapMan:11.1.2.3	Gene3D:3.30.40.10	EntrezGene:8056013	UniProt:C5XDL3	ncoils:Coil	EnsemblPlants:EER98955
ProteinID:EER98955	ProteinID:EER98955.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009719	GO:GO:0009737	GO:GO:0009788	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	EnsemblPlantsGene:SORBI_3002G211900	SUPFAM:SSF57850
unigene:Sbi.12266	UniParc:UPI0001A840AF	RefSeq:XP_002462434.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:60436281..60440107

Molecular Weight (calculated)

36299.8 Da

IEP (calculated)

4.886

GRAVY (calculated)

-0.594

Length

324 amino acids

Sequence
(BLAST)

001: MSATATDEAA VEARLQALRQ RLGKKQHFEE AVNELAAAVR DRYAGASPTL RKSMYSTVCR VATVLQTRYT APGFWRAGLN LFMGTEKLVS NPAEKEHLKT
101: CISRAREHLD EKENEDSMPS SREADTRFLF EGHLTVGQEP PPPAWLVAQN LTRELSILTE SSGDQDGNSN RTVPRAEEIT PAIMNLLESI SGDRDLETAL
201: EESLQGIIEH PPRAPPASKE VVANLPVIAV TEEVIARLGS ETECAVCREN LVVDDKMQEL PCKHLFHPPC LKPWLDENNS CPICRHELRT DDHVYESRKE
301: REKEEEEDRR GAANAVRGGE FMYI

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.