Factsheet for VIT_04s0008g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g05400.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	VIT_07s0005g05400.t01	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G042090.3	Barley	cytosol	30.03	72.73
Bra017440.1-P	Field mustard	cytosol	31.4	65.71
CDY04094	Canola	cytosol	31.4	65.71
VIT_04s0008g02310.t01	Wine grape	cytosol	19.11	63.64
KRH05327	Soybean	cytosol, mitochondrion, nucleus	67.58	63.26
PGSC0003DMT400019033	Potato	cytosol	66.89	63.02
Solyc08g067290.2.1	Tomato	cytosol	65.53	61.54
AT5G20910.1	Thale cress	nucleus	63.82	60.32
CDX70951	Canola	cytosol	61.77	58.77
CDX88834	Canola	cytosol	60.75	57.42
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	59.39	52.73
TraesCS5B01G214500.2	Wheat	cytosol	55.63	50.46
TraesCS5A01G216000.1	Wheat	cytosol	55.63	50.46
TraesCS5D01G223800.1	Wheat	cytosol	55.29	50.15
HORVU5Hr1G062970.1	Barley	cytosol	54.95	49.85
EER98955	Sorghum	cytosol	54.27	49.07
Zm00001d005795_P002	Maize	cytosol	53.92	48.77
Os09t0434200-01	Rice	mitochondrion	55.29	48.21
KRH15708	Soybean	cytosol, nucleus, plastid	54.61	47.9
CDX87889	Canola	cytosol	37.54	44.9
Bra006585.1-P	Field mustard	cytosol	60.41	44.14
GSMUA_Achr4P09670_001	Banana	mitochondrion	34.81	40.64

Protein Annotations

EntrezGene:100247386	wikigene:100247386	MapMan:11.1.2.3	Gene3D:3.30.40.10	ProteinID:CBI20751	ProteinID:CBI20751.3
ncoils:Coil	UniProt:D7SU02	EMBL:FN595231	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009719	GO:GO:0009788	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100247386	wikigene:LOC100247386
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	TIGR:TC55442
UniParc:UPI0001BE1C21	ArrayExpress:VIT_04s0008g02290	EnsemblPlantsGene:VIT_04s0008g02290	EnsemblPlants:VIT_04s0008g02290.t01	unigene:Vvi.7144	RefSeq:XP_002282370
RefSeq:XP_002282370.1	RefSeq:XP_003631814	RefSeq:XP_003631814.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr4:-:1889354..1891807

Molecular Weight (calculated)

32808.7 Da

IEP (calculated)

4.757

GRAVY (calculated)

-0.434

Length

293 amino acids

Sequence
(BLAST)

001: MFEEAVLSIK SLLVDHYSSS SPSLRKLFYS VVCRVATILR TRYTAPGFWL SGLRLFEQAE SMVTDSSEKE NLKSCIAGAR QQLNHVENLS EASETTENRA
101: NRGYLFEGHL TVDPEPPRPQ WLVQSNNLLT AAATLSNLES ANGLTENNNI TSENAASILL QLMDDLQDIV PEILDNDTRA PRVPPASKEV VANLPVITLT
201: EDALSKLSGD AECAICKENF VVDDKMQELP CKHTFHPPCL KPWLDKHNSC PICRHELLTD DRAYESWKQR EKEAEEERKG AANAVRGGEY MYV

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.