Factsheet for Bra017440.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013248.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20910.1	Bra013248.1-P	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04094	Canola	cytosol	100.0	100.0
HORVU6Hr1G042090.3	Barley	cytosol	54.29	62.81
AT5G20910.1	Thale cress	nucleus	76.43	34.52
VIT_04s0008g02290.t01	Wine grape	cytosol	65.71	31.4
KRH05327	Soybean	cytosol, mitochondrion, nucleus	67.86	30.35
Solyc08g067290.2.1	Tomato	cytosol	65.71	29.49
PGSC0003DMT400019033	Potato	cytosol	64.29	28.94
Bra006585.1-P	Field mustard	cytosol	82.14	28.68
Zm00001d005795_P002	Maize	cytosol	63.57	27.47
EER98955	Sorghum	cytosol	62.86	27.16
GSMUA_Achr8P24580_001	Banana	cytosol, mitochondrion, nucleus	62.86	26.67
HORVU5Hr1G062970.1	Barley	cytosol	59.29	25.7
TraesCS5A01G216000.1	Wheat	cytosol	59.29	25.7
TraesCS5B01G214500.2	Wheat	cytosol	59.29	25.7
TraesCS5D01G223800.1	Wheat	cytosol	59.29	25.7
Os09t0434200-01	Rice	mitochondrion	56.43	23.51
GSMUA_Achr4P09670_001	Banana	mitochondrion	37.86	21.12
KRH15708	Soybean	cytosol, nucleus, plastid	42.14	17.66
Bra033953.1-P	Field mustard	mitochondrion	25.71	9.84
Bra004047.1-P	Field mustard	cytosol	7.86	8.87
Bra004287.1-P	Field mustard	mitochondrion	22.86	8.67
VIT_04s0008g02310.t01	Wine grape	cytosol	3.57	5.68

Protein Annotations

EnsemblPlants:Bra017440.1	EnsemblPlants:Bra017440.1-P	EnsemblPlantsGene:Bra017440	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679	PFAM:PF13639	PFscan:PS50089
SEG:seg	SUPFAM:SSF57850	UniParc:UPI0002542340	UniProt:M4DLQ9	MapMan:11.1.2.3	:

Description

AT5G20910 (E=2e-050) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA09:+:15389259..15389942

Molecular Weight (calculated)

15875.0 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.505

Length

140 amino acids

Sequence
(BLAST)

001: MYAFSSIVAG ESSNAADVGN ILEDGGPPRA PPASKEVVKK LPVIVFSEEM LKTLRAVVEC CIYKENLVIG DKMQELPCKH TFRLLCLKPW LDEHNSCPIC
101: RHELPTDDQK YESWKEREKE AEEERKGAEN AVRGGEYMYL

Best Arabidopsis Sequence Match ( AT5G20910.1 )
(BLAST)

001: MDASSSPSPS EESLKLELDD LQKQLNKKLR FEASVCSIHN LLRDHYSSSS PSLRKQFYIV VSRVATVLKT RYTATGFWVA GLSLFEEAER LVSDASEKKH
101: LKSCVAQAKE QLSEVDNQPT ESSQGYLFEG HLTVDREPPQ PQWLVQQNLM SAFASIVGGE SSNGPTENTI GETANLMQEL INGLDMIIPD ILDDGGPPRA
201: PPASKEVVEK LPVIIFTEEL LKKFGAEAEC CICKENLVIG DKMQELPCKH TFHPPCLKPW LDEHNSCPIC RHELPTDDQK YENWKEREKE AEEERKGAEN
301: AVRGGEYMYV

Arabidopsis Description

AIP2E3 ubiquitin-protein ligase AIP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.