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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • nucleus 3
  • mitochondrion 5
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96042 Canola mitochondrion 99.46 99.46
AT1G68180.1 Thale cress mitochondrion 42.01 65.96
Bra004047.1-P Field mustard cytosol 21.95 65.32
Bra033953.1-P Field mustard mitochondrion 44.17 44.54
Bra017440.1-P Field mustard cytosol 8.67 22.86
Bra006585.1-P Field mustard cytosol 12.2 11.22
Protein Annotations
EnsemblPlants:Bra004287.1EnsemblPlants:Bra004287.1-PEnsemblPlantsGene:Bra004287Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR44290PFAM:PF13639PFscan:PS50089SEG:seg
SMART:SM00184SUPFAM:SSF57850UniParc:UPI00025416E2UniProt:M4CJA3MapMan:35.1:
Description
AT1G68180 (E=4e-091) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA07:+:17796704..17798689
Molecular Weight (calculated)
42609.0 Da
IEP (calculated)
5.854
GRAVY (calculated)
-0.585
Length
369 amino acids
Sequence
(BLAST)
001: MASNPYRPRV IVNGTRRTRT FHYFYCRHCS RTIRLRNYGL YGSLCPFCSR EINLHDELDI MRLNRSFWDT DTDWITLHLI NSSRSNRFNH ELVNDTDDDF
101: VDAMPSERVG PPPASLSAIE DLKTVTITEE DLAKEKVCAI CKEEFEVGEE GKELKCLHLY HTSCIVSWLN IHNTCPICRF EVRLGVSGSD IDGGGSRHVD
201: HDRSNRSSGP RVCSLWPLRV MFDWERDKSL SVTEQDGPSP LELPKQSEER LVHLSQTGKY LIVDFSHLSS SSTLGDSYWE CKRPFNKNNQ LWDQNLQDIG
301: VCEDTICDDH DFHIPDIDLT FRNFEELFGA DYDLVADDNN ILFKGTLHQP ICTRQNAISR LKEKKRARA
Best Arabidopsis Sequence Match ( AT1G68180.1 )
(BLAST)
001: MTSAYRPRVI VNGTRRTRTF HYFYCRHCSR TIRLRSFGLY GPICPFCSRE INLHDELDIM RPSRPYWDSD TDWITLHLIN EPRSNRFNHD DLVYNTDEEF
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
Arabidopsis Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT1G68180]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.