Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07397 | Canola | cytosol | 100.0 | 100.0 |
| AT1G68180.1 | Thale cress | mitochondrion | 60.48 | 31.91 |
| Bra033953.1-P | Field mustard | mitochondrion | 68.55 | 23.22 |
| Bra004287.1-P | Field mustard | mitochondrion | 65.32 | 21.95 |
| Bra017440.1-P | Field mustard | cytosol | 8.87 | 7.86 |
| Bra006585.1-P | Field mustard | cytosol | 19.35 | 5.99 |
Protein Annotations
Description
AT1G68180 (E=4e-027) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA07:-:16518751..16519125
Molecular Weight (calculated)
14176.8 Da
IEP (calculated)
4.743
GRAVY (calculated)
-0.434
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSEYRPRVI VNGTRTFHYF YCRNCSRTVQ PRNNGLYGPL CPLCSREINL HDQLDVMRPY WELDADTDTD HELVNTDELV DVMPNERVGP PPASLFATEV
101: VKTVTITEED LAKEKVCAIC NRGV
101: VKTVTITEED LAKEKVCAIC NRGV
001: MTSAYRPRVI VNGTRRTRTF HYFYCRHCSR TIRLRSFGLY GPICPFCSRE INLHDELDIM RPSRPYWDSD TDWITLHLIN EPRSNRFNHD DLVYNTDEEF
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
101: ADVMPSVQIG PPPASQSAIE AVRTVIITDE DLVKEKVCAI CKEEFEVGEE GKELKCLHLY HSSCIVSWLN IHNTCPICRF EVNLGVSESN VDEGGSYNID
201: NDRSNRFRTR VCSLWPLRMM IDWVHNLIDI RITNS
Arabidopsis Description
RING/U-box superfamily protein [Source:TAIR;Acc:AT1G68180]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.