Factsheet for Bra013248.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001864.1-P
Bra006585.1-P
Bra012964.1-P
Bra017440.1-P
Bra018601.1-P
Bra031350.1-P
Bra035933.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	Bra018601.1-P	AT1G08780.1	10743655
AT3G24650.1	Bra001864.1-P	AT3G22320.1	10743655
AT3G24650.1	Bra031350.1-P	AT3G22320.1	10743655
AT3G24650.1	Bra006585.1-P	AT5G20910.1	10743655
AT3G24650.1	Bra017440.1-P	AT5G20910.1	10743655
AT3G24650.1	Bra012964.1-P	AT5G61380.1	10743655
AT3G24650.1	Bra035933.1-P	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93029	Canola	nucleus	99.86	99.72
CDY15121	Canola	nucleus	91.35	97.47
AT3G24650.1	Thale cress	nucleus	87.31	86.94
VIT_07s0005g05400.t01	Wine grape	nucleus	48.54	47.48
KRH46807	Soybean	nucleus	47.7	44.94
KRG99861	Soybean	nucleus	47.14	44.59
PGSC0003DMT400051746	Potato	nucleus	35.15	43.45
Solyc06g083590.2.1	Tomato	nucleus	34.03	42.14
PGSC0003DMT400051934	Potato	nucleus	36.26	41.94
Solyc06g083600.1.1	Tomato	nucleus	36.12	41.77
OQU89229	Sorghum	nucleus	21.2	37.81
GSMUA_AchrUn_...	Banana	nucleus	33.75	35.69
Zm00001d042396_P003	Maize	nucleus	32.22	33.43
EES04085	Sorghum	nucleus	32.36	33.1
Os01t0911700-02	Rice	nucleus	32.36	31.91
TraesCS3B01G452200.1	Wheat	nucleus	30.27	31.54
HORVU3Hr1G092690.2	Barley	nucleus	29.99	31.52
GSMUA_Achr7P23040_001	Banana	nucleus	32.08	31.38
TraesCS3A01G417300.1	Wheat	nucleus	29.99	31.07
TraesCS3D01G412800.1	Wheat	nucleus	29.99	31.07
Bra030087.1-P	Field mustard	nucleus	12.83	26.74
Bra032953.1-P	Field mustard	nucleus	11.3	26.3
Bra032890.1-P	Field mustard	nucleus	12.41	25.14
Bra025229.1-P	Field mustard	nucleus	7.95	20.96
Bra013535.1-P	Field mustard	nucleus	10.04	10.3
Bra022801.1-P	Field mustard	nucleus	11.16	10.22
Bra018313.1-P	Field mustard	nucleus	11.16	10.13
Bra021635.1-P	Field mustard	nucleus	10.6	9.82
Bra023968.1-P	Field mustard	nucleus	10.46	9.74

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra013248	EnsemblPlants:Bra013248.1	EnsemblPlants:Bra013248.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0001076	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006357
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009657	GO:GO:0009719	GO:GO:0009733	GO:GO:0009737	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016043	GO:GO:0031930	GO:GO:0045893	InterPro:IPR003340
InterPro:IPR015300	UniProt:M4D9T8	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002540825	SEG:seg	:	:

Description

AT3G24650 (E=7e-290) ABI3, SIS10 | ABI3 (ABA INSENSITIVE 3); DNA binding / basal transcription repressor/ transcription activator/ transcription factor

Coordinates

chrA03:+:19640342..19643162

Molecular Weight (calculated)

78894.4 Da

IEP (calculated)

5.063

GRAVY (calculated)

-0.683

Length

717 amino acids

Sequence
(BLAST)

001: MKTLHVAANG GDLAEGCGIL AGDADEAVLM DGMGEVGREI WSLDDHGGDG HGHREDDDII VHHDPSMFYG DLPTLPDFPC MSSSSSSSTS PAPLNAIVSS
101: ASSSSAASSS TSSAASWAIL KSDGEDPTPN QNQYASGNCD VESSAALQST ASMEIQLDNT QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFNQD
201: EDTQNLNLMD QTLEREDKIV VPMLENNNNN NSGGDMQVMN PSLEQEDDLA AVFLEWLKNN KETVSADDLR KVKIKKATIE SAAKRLGGGK EAMKQLLKLI
301: LEWVQTNHLQ RRRTTNNNNN LSYQQDPFQN PNLIPPSDQT CFSPSTWVPP PTQPPPPQQP AFVSDPGYGY MPAPNYPPQE YLPLLESPPT WPPPQSGPMP
401: LQQFTMPNPQ YTPFQDPGGG FTGYNMNPYQ YPYLPSSGQM RDQGLLRLCS SATKEARKKR MARQRRFLSH HHRHNNNNNQ QNQTQIGEVC GAVDPQLNHV
501: PTTATGGTWM YWPNVPAMPP PVSSSQLPAM ETQLPTMDRA GSSSVMPRQQ VVPDRRQGWK PEKNLRFLLQ KVLKQSDVGN LGRIVLPKKE AETHLPELEA
601: RDGISLAMED IGTSRVWNLR YRFWPNNKSR MYLLENTGDF VKTNGLQEGD FIVIYSDVKC GKYLIRGVKV RQPAGQKPEA PSSSAAVTKR QSKSQRSINN
701: NSPSANIVAS PTSQAVK

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.