CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92689
KRH03510
KRH05327
KRH15708
KRH34096
KRH39324
KRH48354
KRH54582
KRH56889
KRH63298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	KRG92689	AT1G08780.1	10743655
AT3G24650.1	KRH34096	AT1G08780.1	10743655
AT3G24650.1	KRH39324	AT3G22320.1	10743655
AT3G24650.1	KRH48354	AT3G22320.1	10743655
AT3G24650.1	KRH05327	AT5G20910.1	10743655
AT3G24650.1	KRH15708	AT5G20910.1	10743655
AT3G24650.1	KRH03510	AT5G61380.1	10743655
AT3G24650.1	KRH54582	AT5G61380.1	10743655
AT3G24650.1	KRH56889	AT5G61380.1	10743655
AT3G24650.1	KRH63298	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46807	Soybean	nucleus	91.69	91.33
VIT_07s0005g05400.t01	Wine grape	nucleus	50.53	52.25
Solyc06g083590.2.1	Tomato	nucleus	36.54	47.84
PGSC0003DMT400051746	Potato	nucleus	36.54	47.76
Bra013248.1-P	Field mustard	nucleus	44.59	47.14
PGSC0003DMT400051934	Potato	nucleus	38.52	47.1
AT3G24650.1	Thale cress	nucleus	44.72	47.08
CDY15121	Canola	nucleus	41.69	47.02
CDX93029	Canola	nucleus	44.46	46.94
Solyc06g083600.1.1	Tomato	nucleus	38.13	46.61
OQU89229	Sorghum	nucleus	21.5	40.55
GSMUA_AchrUn_...	Banana	nucleus	33.25	37.17
GSMUA_Achr7P23040_001	Banana	nucleus	34.43	35.61
Zm00001d042396_P003	Maize	nucleus	32.32	35.46
EES04085	Sorghum	nucleus	32.06	34.66
KRH37982	Soybean	cytosol, nucleus, plastid	1.98	34.09
HORVU3Hr1G092690.2	Barley	nucleus	30.47	33.87
TraesCS3D01G412800.1	Wheat	nucleus	30.87	33.81
Os01t0911700-02	Rice	nucleus	32.32	33.7
TraesCS3A01G417300.1	Wheat	nucleus	30.47	33.38
TraesCS3B01G452200.1	Wheat	nucleus	30.21	33.28
KRG94672	Soybean	nucleus	12.01	27.41
KRH06856	Soybean	nucleus	11.74	26.33
KRG89628	Soybean	plastid	10.42	20.95
KRG89627	Soybean	nucleus	10.16	20.42
KRH72829	Soybean	nucleus	10.29	10.86
KRH17186	Soybean	nucleus	10.29	10.77
KRH10760	Soybean	nucleus	10.55	9.11
KRH30646	Soybean	nucleus	10.95	9.11
KRH21568	Soybean	nucleus	10.55	9.1
KRG98129	Soybean	nucleus	11.08	8.98
KRH65426	Soybean	nucleus	10.69	8.95
KRH76125	Soybean	nucleus	10.55	8.81

Protein Annotations

EntrezGene:100810343	MapMan:15.5.5.5	Gene3D:2.40.330.10	UniProt:A0A0R0F1T7	EMBL:ACUP02011334	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_18G176100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	EnsemblPlants:KRG99861	ProteinID:KRG99861	ProteinID:KRG99861.1	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000233EE3C	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:41894037..41898517

Molecular Weight (calculated)

83612.0 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.757

Length

758 amino acids

Sequence
(BLAST)

001: MECEVELQGG DLHAGVVTEP NPIGFGTMEN EHTLAVAERE MWLNSDQDEF LGVNDASMFY ADFPPLPDFP CMSSSSSSSS ALPFPVKTMT CSTRTTTTTT
101: TSSSSSSSSW AVLKSDAEED AEKNHCNRYM HDQLDATLSS TASMEVSQQK NLDPGLGGPV GECMDDVMDT FGYMELLEAN DFFDPASIFQ NEDNENPLVD
201: FGTLEQHVPL HDEQHEMLHH QQGRTEEVDH QVPVCEEIQG DEEGGDGVGV DDEMSNVFLE WLKSNKDSVS ANDLRNVKLK KATIESAARR LGGGKEAMKQ
301: LLKLILEWVQ TSHLQNKRRK ENNGSSISSA LQAQFPDPSV QNNQNTQSGS FSPESNACFN NQTPWLSPQT FATDQAPLMV PPQQFQQPMV GYVGDPYTSG
401: AASNNITTSH NHNSNNPYQP GAEQYHMLES AHSWPHSQFN VACHYSQSFG DNNGIFPHGG FGGGYGNNQY PYQFFHGPGD TLMRLGPSAT KEARKKRMAR
501: QRRFLSHHRH HNGNYQNSGS DPHARLGGGD NCTTGLAAPH HANPTANWMY WQAMTGGAAG PLAPPAEPPA VDRSALQTQN CHQSRVASDR RQGWKPEKNL
601: RFLLQKVLKQ SDVGSLGRIV LPKKEAETHL PELEARDGIS ITMEDIGTSR VWNMRYRYWP NNKSRMYLLE NTGDFVRANG LQEGDFIVIY SDVKCGKYMI
701: RGVKVRQQGV KPETKKVGKS QKNQHGTGTN ASTTACTAAN NGTPSSPKTK AEKSSKLI

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.