Factsheet for HORVU3Hr1G092690.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G048500.1
HORVU1Hr1G052270.3
HORVU1Hr1G077530.1
HORVU2Hr1G026650.1
HORVU2Hr1G084270.1
HORVU2Hr1G084300.6
HORVU3Hr1G078930.1
HORVU4Hr1G028860.1
HORVU5Hr1G014170.10
HORVU5Hr1G062970.1
HORVU5Hr1G093710.1
HORVU5Hr1G106120.3
HORVU6Hr1G011700.1
HORVU6Hr1G042090.3
HORVU6Hr1G057630.1
HORVU6Hr1G071230.1
HORVU7Hr1G020400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	HORVU5Hr1G093710.1	AT1G08780.1	10743655
AT3G24650.1	HORVU1Hr1G048500.1	AT3G22320.1	10743655
AT3G24650.1	HORVU1Hr1G052270.3	AT3G22320.1	10743655
AT3G24650.1	HORVU2Hr1G026650.1	AT3G22320.1	10743655
AT3G24650.1	HORVU2Hr1G084270.1	AT3G22320.1	10743655
AT3G24650.1	HORVU2Hr1G084300.6	AT3G22320.1	10743655
AT3G24650.1	HORVU3Hr1G078930.1	AT3G22320.1	10743655
AT3G24650.1	HORVU4Hr1G028860.1	AT3G22320.1	10743655
AT3G24650.1	HORVU6Hr1G011700.1	AT3G22320.1	10743655
AT3G24650.1	HORVU6Hr1G071230.1	AT3G22320.1	10743655
AT3G24650.1	HORVU7Hr1G020400.1	AT3G22320.1	10743655
AT3G24650.1	HORVU1Hr1G077530.1	AT3G54620.1	12657652
AT3G24650.1	HORVU5Hr1G014170.10	AT3G54620.1	12657652
AT3G24650.1	HORVU5Hr1G106120.3	AT3G54620.1	12657652
AT3G24650.1	HORVU5Hr1G062970.1	AT5G20910.1	10743655
AT3G24650.1	HORVU6Hr1G042090.3	AT5G20910.1	10743655
AT3G24650.1	HORVU6Hr1G057630.1	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G412800.1	Wheat	nucleus	93.4	92.05
TraesCS3B01G452200.1	Wheat	nucleus	92.08	91.28
TraesCS3A01G417300.1	Wheat	nucleus	91.94	90.61
Os01t0911700-02	Rice	nucleus	67.3	63.14
Zm00001d042396_P003	Maize	nucleus	61.88	61.07
EES04085	Sorghum	nucleus	62.17	60.48
OQU89229	Sorghum	nucleus	23.75	40.3
GSMUA_AchrUn_...	Banana	nucleus	34.6	34.81
PGSC0003DMT400051746	Potato	nucleus	29.33	34.48
PGSC0003DMT400051934	Potato	nucleus	30.35	33.39
Solyc06g083590.2.1	Tomato	nucleus	28.3	33.33
Solyc06g083600.1.1	Tomato	nucleus	30.21	33.23
VIT_07s0005g05400.t01	Wine grape	nucleus	35.48	33.02
GSMUA_Achr7P23040_001	Banana	nucleus	35.04	32.61
CDY15121	Canola	nucleus	31.23	31.7
KRH46807	Soybean	nucleus	34.16	30.62
KRG99861	Soybean	nucleus	33.87	30.47
AT3G24650.1	Thale cress	nucleus	32.11	30.42
Bra013248.1-P	Field mustard	nucleus	31.52	29.99
CDX93029	Canola	nucleus	31.52	29.94
HORVU7Hr1G078770.5	Barley	nucleus	10.85	21.2
HORVU3Hr1G067350.2	Barley	nucleus	10.56	19.41
HORVU2Hr1G119600.1	Barley	nucleus	9.82	15.47
HORVU2Hr1G040400.1	Barley	nucleus	7.92	12.8
HORVU2Hr1G017760.4	Barley	plastid	11.29	7.43
HORVU2Hr1G040410.4	Barley	nucleus, plastid	10.12	7.06
HORVU2Hr1G040390.1	Barley	nucleus	0.29	0.99

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0001076
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009657	GO:GO:0009719	GO:GO:0009733
GO:GO:0009737	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016043
GO:GO:0031930	GO:GO:0045893	EnsemblPlantsGene:HORVU3Hr1G092690	EnsemblPlants:HORVU3Hr1G092690.2	InterPro:IPR003340	InterPro:IPR015300
UniProt:M0YIR5	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002955705	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:639792140..639795982

Molecular Weight (calculated)

72496.7 Da

IEP (calculated)

7.965

GRAVY (calculated)

-0.615

Length

682 amino acids

Sequence
(BLAST)

001: MDASAGSSPP RHPQGSAPRR GKGPAVEIRH GEDDFMFAQD TFPALPDFPC LSSPSSSNFS SSSSSNSSSA FAAPAGVGGR GGEGTRGEPS EPAAAGDGVD
101: DLSDIDHLLD FASINDDVPW DDEPLFPDVG MMLEDVISEQ QQQQQQHPLA GYGAGGRVAS DAAGGGGEDA FMGGGGSGSA ADDLPRFFME WLTNNRDCIS
201: AEDLRSIRLR RSTIEAAAAR LGGGRQGTMQ LLKLILTWVQ NHHLQKKRPR VGAMDQEAPP AGGQLPSPGA NPSYEFPTET GAAAATSWMP YQAFSPTASY
301: GGEAMYPFQQ GCSTSSVVVS SQPFSPPAAA DMHAGAWPLQ YAAFVPAGAT SAGTQTYPMP PPGPVPQPFA APGFAGQFPQ RMEPAATREA RKKRMARQRR
401: LSCLQQQRSQ QLNLSQIQTG GFPQEPSPRA AHSAPVWGGH WSPPAVQAQP HGQLMIQVPN PLSTKSNSSR QKQQKPSPDA AARPPSGGAA SQQRQGQAAA
501: SDKQRQQGAS RTAAAPPAGD KNLRFLLQKV LKQSDVGTLG RIVLPKKEAE THLPELKTGD GISIPIEDIG TSQVWSMRYR FWPNNKSRMY LLENTGDFVR
601: SNELQEGDFI VLYSDVKSGK YLIRGVKVRA AQELAKHKNG SPEKGGASEV KAEDGGCKEK SPHGVRRSRQ EAASMNQMAV SI

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.