Factsheet for Os01t0911700-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0805800-01
Os02t0618200-01
Os03t0628900-01
Os03t0796900-01
Os04t0487300-01
Os07t0182000-01
Os09t0434200-01
Os12t0601800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	Os03t0628900-01	AT1G08780.1	10743655
AT3G24650.1	Os01t0805800-01	AT3G22320.1	10743655
AT3G24650.1	Os04t0487300-01	AT3G22320.1	10743655
AT3G24650.1	Os03t0796900-01	AT3G54620.1	12657652
AT3G24650.1	Os07t0182000-01	AT3G54620.1	12657652
AT3G24650.1	Os12t0601800-01	AT3G54620.1	12657652
AT3G24650.1	Os09t0434200-01	AT5G20910.1	10743655
AT3G24650.1	Os02t0618200-01	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04085	Sorghum	nucleus	65.61	68.05
Zm00001d042396_P003	Maize	nucleus	64.24	67.58
TraesCS3D01G412800.1	Wheat	nucleus	64.24	67.49
HORVU3Hr1G092690.2	Barley	nucleus	63.14	67.3
TraesCS3B01G452200.1	Wheat	nucleus	63.55	67.15
TraesCS3A01G417300.1	Wheat	nucleus	63.55	66.76
OQU89229	Sorghum	nucleus	23.93	43.28
GSMUA_AchrUn_...	Banana	nucleus	34.39	36.87
PGSC0003DMT400051746	Potato	nucleus	28.34	35.52
Solyc06g083590.2.1	Tomato	nucleus	27.65	34.72
GSMUA_Achr7P23040_001	Banana	nucleus	34.8	34.52
VIT_07s0005g05400.t01	Wine grape	nucleus	34.25	33.97
CDY15121	Canola	nucleus	31.22	33.78
PGSC0003DMT400051934	Potato	nucleus	28.61	33.55
Solyc06g083600.1.1	Tomato	nucleus	28.61	33.55
AT3G24650.1	Thale cress	nucleus	32.32	32.64
KRH46807	Soybean	nucleus	34.11	32.59
Bra013248.1-P	Field mustard	nucleus	31.91	32.36
KRG99861	Soybean	nucleus	33.7	32.32
CDX93029	Canola	nucleus	31.77	32.17
Os01t0713600-01	Rice	plastid	10.87	27.34
Os08t0101000-01	Rice	nucleus	12.1	24.31
Os04t0676650-00	Rice	nucleus	12.93	21.46
Os04t0676600-01	Rice	nucleus	12.52	21.02
Os07t0563300-01	Rice	nucleus	10.87	8.27
Os07t0679700-01	Rice	nucleus	10.73	8.22

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	EntrezGene:4324314	EMBL:AK073805	EMBL:AK105441	InterPro:B3_DNA-bd
ProteinID:BAA04066.1	ProteinID:BAD82432.1	ProteinID:BAD82433.1	ProteinID:BAF07076.2	ProteinID:BAS75841.1	ProteinID:BAS75842.1
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0001076	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006357	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009657	GO:GO:0009719	GO:GO:0009733	GO:GO:0009737	GO:GO:0009738
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0016043	GO:GO:0031930
GO:GO:0045893	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlantsGene:Os01g0911700	EnsemblPlants:Os01t0911700-02	UniProt:P37398
PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000049EA4B	RefSeq:XP_015629318.1	SEG:seg	:	:	:

Description

VIVIPAROUS 1Similar to Regulatory protein viviparous-1. (Os01t0911700-01);Transcription activator VP1-rice. (Os01t0911700-02)

Coordinates

chr1:-:39723171..39726874

Molecular Weight (calculated)

75806.2 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.546

Length

727 amino acids

Sequence
(BLAST)

001: MDASAGSSAP HSHGNPGKQG GGGGGGGGRG KAPAAEIRGE AARDDVFFAD DTFPLLPDFP CLSSPSSSTF SSSSSSNSSS AFTTAAGGGC GGEPSEPASA
101: ADGFGELADI DQLLDLASLS VPWEAEQPLF PDDVGMMIED AMSGQPHQAD DCTGDGDTKA VMEAAGGGDD AGDACMEGSD APDDLPAFFM EWLTSNREYI
201: SADDLRSIRL RRSTIEAAAA RLGGGRQGTM QLLKLILTWV QNHHLQKKRP RTAIDDGAAS SDPQLPSPGA NPGYEFPSGG QEMGSAAATS WMPYQAFTPP
301: AAYGGDAMYP GAAGPFPFQQ SCSKSSVVVS SQPFSPPTAA AAGDMHASGG GNMAWPQQFA PFPVSSTSSY TMPSVVPPPF TAGFPGQYSG GHAMCSPRLA
401: GVEPSSTKEA RKKRMARQRR LSCLQQQRSQ QLNLSQIHIS GHPQEPSPRA AHSAPVTPSS AGCRSWGIWP PAAQIIQNPL SNKPNPPPAT SKQPKPSPEK
501: PKPKPQAAAT AGAESLQRST ASEKRQAKTD KNLRFLLQKV LKQSDVGSLG RIVLPKEAEV HLPELKTRDG VSIPMEDIGT SQVWNMRYRF WPNNKSRMYL
601: LENTGDFVRS NELQEGDFIV IYSDIKSGKY LIRGVKVRRA AQEQGNSSGA VGKHKHGSPE KPGVSSNTKA AGAEDGTGGD DSAEAAAAAA AGKADGGGCK
701: GKSPHGVRRS RQEAAAAASM SQMAVSI

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.