Factsheet for Os07t0563300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G204300.1	Wheat	plastid	72.98	72.3
TraesCS2B01G231800.1	Wheat	plastid	72.67	72.29
KXG36480	Sorghum	nucleus	73.09	72.11
TraesCS2D01G211600.2	Wheat	plastid	72.57	71.89
Zm00001d021790_P010	Maize	nucleus	72.77	71.87
Zm00001d006597_P003	Maize	plastid	71.41	70.67
HORVU2Hr1G040410.4	Barley	nucleus, plastid	70.89	69.29
HORVU2Hr1G040400.1	Barley	nucleus	29.74	67.3
GSMUA_Achr8P03800_001	Banana	nucleus	49.84	58.26
GSMUA_Achr4P23790_001	Banana	nucleus	52.88	56.81
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	52.36	56.12
VIT_00s0181g00260.t01	Wine grape	nucleus	29.53	49.04
KRH10760	Soybean	nucleus	44.61	48.52
KRH21568	Soybean	nucleus	44.29	48.12
Bra013535.1-P	Field mustard	nucleus	27.54	37.63
Solyc02g079020.2.1	Tomato	nucleus	40.73	37.3
CDX79071	Canola	nucleus	27.64	36.57
CDX82834	Canola	nucleus	27.54	36.38
AT4G21550.1	Thale cress	nucleus, plastid	26.39	35.24
Os07t0679700-01	Rice	nucleus	34.55	34.77
PGSC0003DMT400057590	Potato	nucleus	12.57	25.97
Os01t0713600-01	Rice	plastid	6.18	20.42
Os08t0101000-01	Rice	nucleus	5.97	15.75
Os04t0676650-00	Rice	nucleus	6.91	15.07
Os04t0676600-01	Rice	nucleus	6.49	14.32
Os01t0911700-02	Rice	nucleus	8.27	10.87

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	EntrezGene:4343608	InterPro:B3_DNA-bd	ProteinID:BAC20873.1
ProteinID:BAF21909.2	ProteinID:BAT02153.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0046872	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR013087	InterPro:IPR015300
EnsemblPlantsGene:Os07g0563300	EnsemblPlants:Os07t0563300-01	PFAM:PF02362	PFAM:PF07496	ScanProsite:PS00028	PFscan:PS50863
PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	UniProt:Q0D5G4	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI0001A51C21	RefSeq:XP_015647112.1	InterPro:Znf_C2H2_type	InterPro:Znf_CW	SEG:seg	:

Description

GERMINATION DEFECTIVE 1B3 domain transcriptional repressor, Regulator of seed germination and seedling development (Os07t0563300-01)

Coordinates

chr7:+:22534900..22542783

Molecular Weight (calculated)

105725.0 Da

IEP (calculated)

8.251

GRAVY (calculated)

-0.823

Length

955 amino acids

Sequence
(BLAST)

001: MSSPAQPPPT RPPVAAPPPS LAAAAPISVQ PPPLQPKPPP HPQQPPQAVV SVGVGPPPPT PQHQQQQQGP PGHAPPQQRP RICFNAHCKD PKSDGPRRRG
101: WRLRNGDFAE LCDRCYHSFE HGGFCETFHL EVAGWRNCES CGKRLHCGCI VSVHAFVHLD AGGVECVMCA RKSHAAMAPS QIWSSSMHMA QNVADRKDNF
201: VKSWRPPAGQ FSSQWRQNNM WSMSTMQSDL QQRLAFEFDR PSGSEKLLPG RTFIHAHEKK FDDMHDRSTT PAGMNQIMRE RYANGHTQHT TLDPTYAYTL
301: YHREGTNPNL HDHSHHAGEN DHLTARKGVT SDPCSSVSTT FKLDSHHPSI LKDDPSAVPA GLSSNFSSAN GPKDHIRIGP TQQQQQMASS SLQKQFYSHS
401: VIDNDFQAQL RNGRPRMDAK ARSQLLPRYW PRITDQELQH LSGDSNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP AISQAEGLPL KVQDATGKEW
501: VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRI DPEGKLVMGF RKATNLSAEQ DQPTKPANGV LPPPEANNKV VVPDSSPNAA VPRPIKVNTE
601: SKSSSPVEQA TACKIDKGAL PQKEGPGTSS SSPLPVKRKA TSVGPKIKRF HMDSEESMEL KITWEEAQEL LRPPPKAPSI VVVDGHEFEE YEEPPILGRR
701: TYFVTDQSGE NHQWAQCEDC SKWRKLPVDA LLPSKWTCSD NKWDSERSSC DSAQEINMEE LGEMIPIKPG AAKKTKGKVD TDNIDVSDGL DTLANLAILG
801: EGESLPSQPT TRHPRHRPGC SCIVCIQPPS GKGPKHKQTC TCNVCMTVRR RFRTLMMRRE KRQQSEKDSG VPRKREPGQS SEPVPQSGSG AHPTSTSSPH
901: QRADTNGEGP EDMSIDNKRT SSPVKNQIDL NSQPEREDEQ SPKSDATRLL RDNPT

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.