Factsheet for GSMUA_Achr7P00120_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P23790_001	Banana	nucleus	74.19	74.35
GSMUA_Achr8P03800_001	Banana	nucleus	61.95	67.56
KRH21568	Soybean	nucleus	52.53	53.24
KRH10760	Soybean	nucleus	51.96	52.73
Os07t0563300-01	Rice	nucleus	56.12	52.36
TraesCS2B01G231800.1	Wheat	plastid	54.55	50.62
TraesCS2A01G204300.1	Wheat	plastid	54.66	50.52
TraesCS2D01G211600.2	Wheat	plastid	54.43	50.31
HORVU2Hr1G040410.4	Barley	nucleus, plastid	54.99	50.15
KXG36480	Sorghum	nucleus	54.43	50.1
VIT_00s0181g00260.t01	Wine grape	nucleus	32.21	49.91
Zm00001d006597_P003	Maize	plastid	53.65	49.53
Zm00001d021790_P010	Maize	nucleus	53.54	49.33
HORVU2Hr1G040400.1	Barley	nucleus	21.44	45.26
GSMUA_Achr5P27940_001	Banana	nucleus	10.77	43.64
GSMUA_Achr8P01750_001	Banana	nucleus	37.93	39.44
Solyc02g079020.2.1	Tomato	nucleus	45.9	39.21
GSMUA_Achr5P27930_001	Banana	nucleus	25.48	39.14
AT4G21550.1	Thale cress	nucleus, plastid	30.08	37.48
Bra013535.1-P	Field mustard	nucleus	29.18	37.2
CDX82834	Canola	nucleus	29.97	36.93
CDX79071	Canola	nucleus	29.52	36.43
PGSC0003DMT400057590	Potato	nucleus	15.82	30.52
GSMUA_Achr3P00120_001	Banana	nucleus	5.72	28.18
GSMUA_Achr8P18070_001	Banana	nucleus	5.61	24.04
GSMUA_Achr3P32440_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	5.27	23.15
GSMUA_AchrUn_...	Banana	nucleus	8.08	10.62
GSMUA_Achr7P23040_001	Banana	nucleus	7.63	9.28

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G00120_001	EnsemblPlants:GSMUA_Achr7P00120_001
EnsemblPlants:GSMUA_Achr7T00120_001	InterPro:IPR003340	InterPro:IPR011124	InterPro:IPR015300	UniProt:M0TDF2	PFAM:PF02362
PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0002959133	InterPro:Znf_CW	SEG:seg	:	:

Description

B3 domain-containing protein Os07g0563300 [Source:GMGC_GENE;Acc:GSMUA_Achr7G00120_001]

Coordinates

chr7:-:111084..126687

Molecular Weight (calculated)

100082.0 Da

IEP (calculated)

8.327

GRAVY (calculated)

-0.645

Length

891 amino acids

Sequence
(BLAST)

001: MSSPSSAAAT TAKICFNSQC KEPFPDTPPT RRKGWRLRSG EIAELCDRCS CMFEQGNFCE TFHSDDGGWR NCETCGKRVH CGCIVSAPTY VFVDAGGVDC
101: VACARKSLVT IVQLPLWLEH IYNNMIILFL VWSAFFFSIN LSERKEFPAK SWKPLNGPFF GQWRQSPHMW NMTSAQSDLQ QRLSYEFDRP NCIEKLTPGG
201: RHSILAHEKK FENLSERPIT SNVARERYVN ANLDAHLNSC VKPATSSAIK EDTSPLGLAA PFQSANDLKE PSRYSNQSQG QAGYPLSKQF YPQSMMDAEL
301: QTHIRNGKSR VDNRARSQLL PRYWPRITDK ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE AYFPTISQPE GLPLKVQDAN GKDWVFQFRF
401: WPNNNSRMYV LEGVTPCIQA MQLQAGDTVT FSRIDPEGKL IMGFRKASSV SNEQDSQTLK SGNGFSTPPE AEQWNCTKLA NEGLLQKDGL NARSSQGSRR
501: KGGNLGSKSK RLRIENEDSM ELKVTWEEAQ QLLRPPPNCI PSVVLVEGHE FEEYEEAPVL GKPTYFTTNQ SGENYQWAQC EDCSKWRRLP VDALLPSRWT
601: CSNNMSDPER SLCSAAQELS MEQLAELIPC KAGASKRSKV KVETDNIEVS DGLDTLANLA ILGEGENLPP SQPTTKHPRH RPGCTCIVCI QPPSGKGPKH
701: KQTCTCNVCL TVKRRFRTLM LRREKRQSEK EAETARKQQK QQSNQSPEKA PGGSDPLKTD LGVNKTPRKA MTNDEGISDE GLERRRASQS PLKAPQIDLN
801: IQPEREEEPS PKSDSGSMMR LLQDAATSFK SSCVQFVQLQ DGWACCSRIK ILLCWFKHHT QIMNFCSTLF VHCLEKEKKK DEVDKRPCKA V

Best Arabidopsis Sequence Match ( AT4G32010.2 )
(BLAST)

001: MESIKVCMNA LCGAASTSGE WKKGWPMRSG DLASLCDKCG CAYEQSIFCE VFHAKESGWR ECNSCDKRLH CGCIASRFMM ELLENGGVTC ISCAKKSGLI
101: SMNVSHESNG KDFPSFASAE HVGSVLERTN LKHLLHFQRI DPTHSSLQMK QEESLLPSSL DALRHKTERK ELSAQPNLSI SLGPTLMTSP FHDAAVDDRS
201: KTNSIFQLAP RSRQLLPKPA NSAPIAAGME PSGSLVSQIH VARPPPEGRG KTQLLPRYWP RITDQELLQL SGHSNSKIIP LFEKVLSASD AGRIGRLVLP
301: KACAEAYFPP ISLPEGLPLK IQDIKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRTE PEGKLVMGYR KATNSTATQM FKGSSEPNLN
401: MFSNSLNPGC GDINWSKLEK SEDMAKDNLF LQSSLTSARK RVRNIGTKSK RLLIDSVDVL ELKITWEEAQ ELLRPPQSTK PSIFTLENQD FEEYDEPPVF
501: GKRTLFVSRQ TGEQEQWVQC DACGKWRQLP VDILLPPKWS CSDNLLDPGR SSCSAPDELS PREQDTLVRQ SKEFKRRRLA SSNEKLNQSQ DASALNSLGN
601: AGITTTGEQG EITVAATTKH PRHRAGCSCI VCSQPPSGKG KHKPSCTCTV CEAVKRRFRT LMLRKRNKGE AGQASQQAQS QSECRDETEV ESIPAVELAA
701: GENIDLNSDP GASRVSMMRL LQAAAFPLEA YLKQKAISNT AGEQQSSDMV STEHGSSSAA QETEKDTTNG AHDPVN

Arabidopsis Description

VAL2B3 domain-containing transcription repressor VAL2 [Source:UniProtKB/Swiss-Prot;Acc:Q5CCK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.