Factsheet for Zm00001d006597_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021790_P010	Maize	nucleus	92.44	92.24
KXG36480	Sorghum	nucleus	90.47	90.19
Os07t0563300-01	Rice	nucleus	70.67	71.41
TraesCS2A01G204300.1	Wheat	plastid	66.84	66.91
TraesCS2D01G211600.2	Wheat	plastid	66.74	66.81
TraesCS2B01G231800.1	Wheat	plastid	65.91	66.25
HORVU2Hr1G040400.1	Barley	nucleus	28.91	66.11
HORVU2Hr1G040410.4	Barley	nucleus, plastid	64.87	64.07
GSMUA_Achr4P23790_001	Banana	nucleus	50.78	55.12
GSMUA_Achr8P03800_001	Banana	nucleus	45.7	53.98
GSMUA_Achr7P00120_001	Banana	nucleus, plastid	49.53	53.65
VIT_00s0181g00260.t01	Wine grape	nucleus	28.91	48.52
KRH21568	Soybean	nucleus	43.42	47.67
KRH10760	Soybean	nucleus	43.01	47.27
Bra013535.1-P	Field mustard	nucleus	26.63	36.77
CDX82834	Canola	nucleus	26.94	35.96
CDX79071	Canola	nucleus	26.84	35.87
Solyc02g079020.2.1	Tomato	nucleus	38.65	35.76
AT4G21550.1	Thale cress	nucleus, plastid	26.11	35.24
Zm00001d022440_P005	Maize	plastid	33.58	33.64
Zm00001d007173_P003	Maize	mitochondrion, nucleus	31.09	29.64
PGSC0003DMT400057590	Potato	nucleus	12.95	27.06
Zm00001d012162_P002	Maize	mitochondrion	4.04	22.03
Zm00001d037893_P001	Maize	mitochondrion	5.18	17.86
Zm00001d011712_P001	Maize	mitochondrion	6.84	16.84
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	5.08	16.72
Zm00001d045970_P001	Maize	mitochondrion	4.35	16.28
Zm00001d034965_P002	Maize	nucleus	5.91	15.32
Zm00001d052750_P001	Maize	nucleus	5.6	14.63
Zm00001d001838_P001	Maize	nucleus	6.32	13.9
Zm00001d042396_P003	Maize	nucleus	8.39	11.72
Zm00001d029836_P001	Maize	plastid	0.83	9.09

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	UniProt:A0A1D6EY69	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR011124
InterPro:IPR015300	ProteinID:ONM24364.1	PFAM:PF02362	PFAM:PF07496	PFscan:PS50863	PFscan:PS51050
PANTHER:PTHR23336	PANTHER:PTHR23336:SF10	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0008439CB2	EnsemblPlantsGene:Zm00001d006597
EnsemblPlants:Zm00001d006597_P003	EnsemblPlants:Zm00001d006597_T003	InterPro:Znf_CW	SEG:seg	:	:

Description

B3 domain-containing transcription factor VAL3

Coordinates

chr2:+:211806189..211818682

Molecular Weight (calculated)

106440.0 Da

IEP (calculated)

8.345

GRAVY (calculated)

-0.768

Length

965 amino acids

Sequence
(BLAST)

001: MSSPATQQAP PVQPPPPPAA AAPTAAPATV SATPISVQLP SIQPQPQPPG PASGPQLPMP AQLLNLGTQP PLYRGPICWN SYCKDPDPNS FGRRGWKVRS
101: GPPYSVYADL CGRCYSQFEQ GIYCETFHSE EGGWRNCESC GRRVHCGCIV SIHKYQLRDA GGVDCAKCAR STRAAMAPPS PVWTNPIHSS QNVSDRKDIP
201: VKSWRPPAGQ ISSQWRQTNL WSMSSIQSDL QQRLAFEFDR PSGSEKLLPG RTFIHAQERK SDDMHDRPIT PAGMIHIMRE RDPNGHGQPT NMDPAYSYTL
301: YHRDGSHPNN LHDSSHHGGE NDSSSSRKVA MPEASTSVDA GFKLDSHHPS NLKDDPPSLS VALASNFPSQ NGPKDHIRIA PTQQQAQMAS SPLQKQFYSH
401: TVTGYNEFQA QMRNGRPRMD SKARSQLLPR YWPRITDQEL QHLSSEYPTY STYVNDSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPPISQPEGL
501: PLKVQDAGGK EWIFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RIDPEGKLIM GFRKATNNSF EQEQATKPVN GAPATSEVNG KVSAPDSSPN
601: AAVSRQNMVK TETKSSSPVE QATVSKMDKD RLTQKEGPGI ASSSPGSLKR KTTNLGQKNK RLRMDNEESM ELKITWEEAQ ELLRPPPKVP SIVIVDGHEF
701: EEYEEPPILG RKTYFVADKS GLNHQWVQCE DCSKWRKVPI DALLPSKWTC FDNKWDSERS SCEPAQEISL EELAELIPIK PGKKPRLKIE SDAIDASDGL
801: DTLANLAILG EGEALPSQPT TKHPRHRPGC SCIVCIQPPS GKGPKHKQTC TCNVCMTVRR RFRTLMLRRE KKVTRDSSRK KETGQSSEKV TQQAVSGPPG
901: ANGSATSSPQ KADGNADAPE DMAVDHKVTS SPVKNHIDLN IQPERDDEQS PKSGAAGLLS RDHPT

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.