Factsheet for Zm00001d034965_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052750_P001	Maize	nucleus	86.02	86.72
EES14344	Sorghum	nucleus	83.33	83.56
TraesCS7D01G326300.2	Wheat	nucleus	55.65	60.53
TraesCS7B01G230100.2	Wheat	nucleus	55.38	60.06
TraesCS7A01G329600.1	Wheat	nucleus	55.65	60.0
HORVU7Hr1G078770.5	Barley	nucleus	54.84	58.45
Os08t0101000-01	Rice	nucleus	53.49	54.97
GSMUA_Achr3P00120_001	Banana	nucleus	17.74	36.46
VIT_10s0071g00270.t01	Wine grape	nucleus	20.97	25.57
Zm00001d001838_P001	Maize	nucleus	29.57	25.06
Zm00001d011712_P001	Maize	mitochondrion	19.35	18.37
Zm00001d042396_P003	Maize	nucleus	20.97	11.29
Zm00001d022440_P005	Maize	plastid	16.13	6.23
Zm00001d006597_P003	Maize	plastid	15.32	5.91
Zm00001d021790_P010	Maize	nucleus	14.78	5.69
Zm00001d007173_P003	Maize	mitochondrion, nucleus	14.52	5.34
Zm00001d045970_P001	Maize	mitochondrion	1.88	2.71
Zm00001d037893_P001	Maize	mitochondrion	1.88	2.5
Zm00001d012162_P002	Maize	mitochondrion	1.08	2.26
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	1.61	2.05
Zm00001d029836_P001	Maize	plastid	0.0	0.0

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	UniProt:A0A1D6LDA7	ProteinID:AQK78009.1	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362
PANTHER:PTHR31140	PANTHER:PTHR31140:SF12	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0008456AB6	EnsemblPlantsGene:Zm00001d034965
EnsemblPlants:Zm00001d034965_P002	EnsemblPlants:Zm00001d034965_T002	SEG:seg	:	:	:

Description

ABI3-VP1-transcription factor 49Putative B3 DNA binding domain family protein

Coordinates

chr6:-:290046..293456

Molecular Weight (calculated)

40627.6 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.530

Length

372 amino acids

Sequence
(BLAST)

001: MGQMGGPDGD GPHHQYHYQA LLAAVQNPSQ GLHVPLHAGA GAPAAGPGPR PGADADASST HNANATPHSQ PPRAFTDWSA SNSAFAAQPA PATTNTPFHY
101: NLSQSYALWT HYMLNKNVSY STYSTPHEPL RHTHIPDKYS ACPDSYPLMQ NQPFTIPPPP QLVSSYSLET TGCAFSLGFD SFTTMSLGPN ICANMTPMER
201: SISAKEPENS EDLPTVVRSS DEMDTRNSGD VRRDTVDTLP ESKQSHESCA SVSNKFDSGE YQVILRKELT KSDVANSGRI VLPKKDAEAG LPPLVQGDPL
301: ILQMDDMVLP IIWKFKYRFW PNNKSRMYIL EAAGEFVKTH GLQAGDTLII YKNSVPGKFI IRGEKSIQQT NL

Best Arabidopsis Sequence Match ( AT1G28300.1 )
(BLAST)

001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW

Arabidopsis Description

LEC2B3 domain-containing transcription factor LEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.