Factsheet for Os08t0101000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G326300.2	Wheat	nucleus	59.39	62.87
TraesCS7B01G230100.2	Wheat	nucleus	59.12	62.39
TraesCS7A01G329600.1	Wheat	nucleus	59.12	62.03
HORVU7Hr1G078770.5	Barley	nucleus	59.39	61.6
Zm00001d052750_P001	Maize	nucleus	58.84	57.72
EES14344	Sorghum	nucleus	58.29	56.87
Zm00001d034965_P002	Maize	nucleus	54.97	53.49
GSMUA_Achr3P00120_001	Banana	nucleus	17.68	35.36
Os04t0676650-00	Rice	nucleus	35.08	29.0
Os04t0676600-01	Rice	nucleus	32.6	27.25
VIT_10s0071g00270.t01	Wine grape	nucleus	22.38	26.56
Os01t0713600-01	Rice	plastid	17.68	22.15
Os01t0911700-02	Rice	nucleus	24.31	12.1
Os07t0563300-01	Rice	nucleus	15.75	5.97
Os07t0679700-01	Rice	nucleus	15.19	5.8

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	EntrezGene:4344415	EMBL:AK107456	InterPro:B3_DNA-bd	ProteinID:BAD03551.1
ProteinID:BAF22671.1	ProteinID:BAT03400.1	EMBL:BR000654	InterPro:DNA-bd_pseudobarrel_sf	ProteinID:EEE67890.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlantsGene:Os08g0101000	EnsemblPlants:Os08t0101000-01	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140	PANTHER:PTHR31140:SF12
UniProt:Q6Z1Z3	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0000226150	RefSeq:XP_015648159.1	SEG:seg

Description

IDE-BINDING FACTOR 1ABI3/VP1 transcription factor family protein, Regulation of iron-deficiency response and tolerance (Os08t0101000-01)

Coordinates

chr8:-:63575..67520

Molecular Weight (calculated)

39943.7 Da

IEP (calculated)

7.730

GRAVY (calculated)

-0.702

Length

362 amino acids

Sequence
(BLAST)

001: MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PFPNPFPAPS SGAEPPHPHN HNHNHNHNHN IHNSHNHNHN HNAAPHPCHT PTPTPTPRGF ADWSASTSAF
101: TSLAAHSSTA PSNAVHYSFS PCYAFWTHYM LNKNAYPTSF PAPHDDHLRL ANNNHPRDAP GPASSYGVES FTSPSMAPNI CTHMPPIEGP ISAKEDKKPE
201: ILPRVVKSSD ELETRNSNVE FHSETVGTLP ESKQGHDSRA TKLLNSGEYQ VILRKELTKS DVGNVGRIVL PKKDAEASLP PLLQRDPLIL HMDDMVLPVT
301: WKFKYRYWPN NKSRMYILDS AGEFLKTHGL QAGDVIIIYK NLAPGKFIIR GEKAIHQQTT NP

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.