CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052750_P001	Maize	nucleus	92.72	93.22
Zm00001d034965_P002	Maize	nucleus	83.56	83.33
TraesCS7D01G326300.2	Wheat	nucleus	58.49	63.45
TraesCS7B01G230100.2	Wheat	nucleus	57.95	62.68
TraesCS7A01G329600.1	Wheat	nucleus	58.22	62.61
HORVU7Hr1G078770.5	Barley	nucleus	57.95	61.6
Os08t0101000-01	Rice	nucleus	56.87	58.29
GSMUA_Achr3P00120_001	Banana	nucleus	17.52	35.91
KXG27429	Sorghum	nucleus	32.61	26.83
VIT_10s0071g00270.t01	Wine grape	nucleus	21.83	26.56
KXG33236	Sorghum	mitochondrion, nucleus	18.33	17.35
OQU89229	Sorghum	nucleus	17.25	15.92
EES04085	Sorghum	nucleus	22.91	12.13
EER99914	Sorghum	nucleus	15.63	6.06
KXG36480	Sorghum	nucleus	14.56	5.58

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	InterPro:B3_DNA-bd	UniProt:C5YLC1	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EES14344
ProteinID:EES14344	ProteinID:EES14344.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0044212	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PANTHER:PTHR31140	PANTHER:PTHR31140:SF12
SMART:SM01019	EnsemblPlantsGene:SORBI_3007G000400	SUPFAM:SSF101936	unigene:Sbi.14098	UniParc:UPI0003C67B3D	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:68387..72349

Molecular Weight (calculated)

40082.9 Da

IEP (calculated)

6.590

GRAVY (calculated)

-0.544

Length

371 amino acids

Sequence
(BLAST)

001: MGQMGGPDGD GDGGGGGPHH QYHYQALLAA VQNPSQGLHP FPLPFHLPLH AGAPAAGPVV ADADAASTHG ANANAAPHSQ PPRGFTDWSP SNSAFAAVAA
101: QPAPATTNTP FHYNVPQSYA LWTHYMLNKN VSCSTYPTQH EENPHPLRQT HIPEENPHPL RHSHIPDKDS GCASSLGFDS FTTMSLGPNI CAHMTPMEGS
201: ISAKEPENSQ DLPAVVRSSD EMDTRNSGEV HRDTAGTLPE SKQSHESCAS MSNKFNSGEY QVILRKELTK SDVANSGRIV LPKKDAEAGL PPLVQGDPLI
301: LQMDDMVLPI IWKFKYRFWP NNKSRMYILE AAGEFVKTHG LQAGDALIIY KNSVPGKFII RGEKSIQQTN P

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.