CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90738
EER91208
EER95953
EER98955
EES05438
EES16316
KXG26596
KXG33574
KXG34539

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	EER91208	AT1G08780.1	10743655
AT3G24650.1	KXG26596	AT3G22320.1	10743655
AT3G24650.1	KXG33574	AT3G22320.1	10743655
AT3G24650.1	EER90738	AT3G54620.1	12657652
AT3G24650.1	EER95953	AT3G54620.1	12657652
AT3G24650.1	EES16316	AT3G54620.1	12657652
AT3G24650.1	KXG34539	AT3G54620.1	12657652
AT3G24650.1	EER98955	AT5G20910.1	10743655
AT3G24650.1	EES05438	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04085	Sorghum	nucleus	47.51	27.25
Solyc06g083590.2.1	Tomato	nucleus	35.82	24.87
PGSC0003DMT400051934	Potato	nucleus	38.06	24.68
PGSC0003DMT400051746	Potato	nucleus	35.57	24.66
Solyc06g083600.1.1	Tomato	nucleus	37.81	24.52
Os01t0911700-02	Rice	nucleus	43.28	23.93
TraesCS3B01G452200.1	Wheat	nucleus	40.8	23.84
HORVU3Hr1G092690.2	Barley	nucleus	40.3	23.75
TraesCS3D01G412800.1	Wheat	nucleus	40.8	23.7
VIT_07s0005g05400.t01	Wine grape	nucleus	43.03	23.6
TraesCS3A01G417300.1	Wheat	nucleus	40.3	23.41
CDY15121	Canola	nucleus	37.56	22.47
GSMUA_AchrUn_...	Banana	nucleus	37.31	22.12
KRH46807	Soybean	nucleus	40.8	21.55
KRG99861	Soybean	nucleus	40.55	21.5
AT3G24650.1	Thale cress	nucleus	38.31	21.39
CDX93029	Canola	nucleus	38.06	21.31
Bra013248.1-P	Field mustard	nucleus	37.81	21.2
GSMUA_Achr7P23040_001	Banana	nucleus	38.06	20.87
KXG33236	Sorghum	mitochondrion, nucleus	17.16	17.6
EES14344	Sorghum	nucleus	15.92	17.25
KXG27429	Sorghum	nucleus	15.67	13.97
KXG36480	Sorghum	nucleus	13.93	5.79
EER99914	Sorghum	nucleus	13.18	5.54

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	UniProt:A0A1B6QBR4	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	ProteinID:KXG35344.1
EnsemblPlants:OQU89229	ProteinID:OQU89229	ProteinID:OQU89229.1	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140
PANTHER:PTHR31140:SF1	SMART:SM01019	EnsemblPlantsGene:SORBI_3002G161600	SUPFAM:SSF101936	UniParc:UPI00081AE7C2	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:49916726..49921068

Molecular Weight (calculated)

43708.5 Da

IEP (calculated)

7.430

GRAVY (calculated)

-0.500

Length

402 amino acids

Sequence
(BLAST)

001: MDASTGVPSK PASAGMDVMS APPHLASDAD GSREEKYVPG VTGSEVAYTH VSAAGEEEPP QFLIDWWVTS IRESISAEDL CNIRFRRSTI QAATARLGGG
101: RQGNLQLLKL IFTWVQNNHQ RPRDVMEEAA GLHGQVSSSP PGANPVPGYE FPAGGQHIAA GGGTSLTPLI QQPSTPPARA AGQHHLFHQS SSKSSVVVSR
201: QLFSPGFGGQ YAGAASHLIM AGVEASATKE KQKDDSVQRL AAYKRQGAKA EEKLRFLLQK ELKQSDVGEL GRIVLPKMEA EVHLPELKTK YGISIPMEDI
301: GTSRVWNMQY RFWSDNKSRM YVLGNTGEFV RSNELQQGDF IVIYSDVKSG KYLIQGVKVK PPDTTTTDSA HLVRDTSEVD LDEVDKKKER TSTDGGSFKS
401: KL

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.