Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08780.1 | EES04085 | AT3G24650.1 | 10743655 |
| AT1G08780.1 | OQU89229 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013708_P001 | Maize | cytosol | 98.41 | 98.41 |
| Os03t0628900-01 | Rice | cytosol | 96.03 | 96.03 |
| TraesCS5D01G388600.1 | Wheat | cytosol | 91.27 | 91.27 |
| VIT_14s0081g00080.t01 | Wine grape | cytosol | 76.98 | 76.98 |
| KRG92689 | Soybean | cytosol | 76.98 | 76.98 |
| KRH34096 | Soybean | cytosol | 76.98 | 76.98 |
| PGSC0003DMT400050100 | Potato | cytosol | 75.4 | 74.22 |
| Solyc01g097300.2.1 | Tomato | cytosol | 74.6 | 73.44 |
| Bra030740.1-P | Field mustard | cytosol | 74.6 | 71.76 |
| CDY31129 | Canola | cytosol | 74.6 | 71.76 |
| AT1G08780.1 | Thale cress | cytosol | 73.02 | 71.32 |
| Bra018601.1-P | Field mustard | cytosol | 70.63 | 68.99 |
| CDX95034 | Canola | cytosol | 70.63 | 68.99 |
| CDX93538 | Canola | cytosol | 70.63 | 68.99 |
| GSMUA_Achr4P17760_001 | Banana | cytosol | 84.92 | 67.3 |
| CDY66241 | Canola | cytosol | 74.6 | 60.26 |
| HORVU5Hr1G093710.1 | Barley | cytosol, plastid, vacuole | 33.33 | 21.21 |
Protein Annotations
| Gene3D:1.10.287.370 | MapMan:20.3.2.4 | EntrezGene:8062247 | UniProt:C5WS57 | ncoils:Coil | EnsemblPlants:EER91208 |
| ProteinID:EER91208 | ProteinID:EER91208.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006457 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016272 | GO:GO:0051082 | GO:GO:0051087 | InterPro:IPR009053 | PFAM:PF01920 |
| InterPro:PFDN4 | InterPro:PFD_beta-like | PIRSF:PIRSF016477 | PANTHER:PTHR21100 | InterPro:Prefoldin | EnsemblPlantsGene:SORBI_3001G162000 |
| SUPFAM:SSF46579 | UniParc:UPI00000AB29B | RefSeq:XP_002464210.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:+:13343621..13346362
Molecular Weight (calculated)
14690.2 Da
IEP (calculated)
4.203
GRAVY (calculated)
-0.939
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQGDGTEAQ VTWEDQQNIN RFGRLNNRLH ELQDEIKLAK ETNENLDDAG NELILSDEDV VRFQIGEVFA HMPRDDVETR LEQMKEDAAK KLERLEEEKE
101: SILAQMAELK KILYGKFKDA INLEED
101: SILAQMAELK KILYGKFKDA INLEED
001: MQQQGSKSGS EMEVTWEDQQ NINIFSRLNN RVHDLDDDIK SAKEKCENLE DAGNELILAD EEMVRFQIGE VFAHVPRDDV ETKIEEMKEA TCKSLEKLEQ
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
Arabidopsis Description
AIP3Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4B5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.