Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G417300.1 | |
| TraesCS3B01G452200.1 | |
| TraesCS3D01G412800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08780.1 | TraesCS3A01G417300.1 | AT3G24650.1 | 10743655 |
| AT1G08780.1 | TraesCS3B01G452200.1 | AT3G24650.1 | 10743655 |
| AT1G08780.1 | TraesCS3D01G412800.1 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91208 | Sorghum | cytosol | 91.27 | 91.27 |
| Zm00001d013708_P001 | Maize | cytosol | 89.68 | 89.68 |
| Os03t0628900-01 | Rice | cytosol | 89.68 | 89.68 |
| KRG92689 | Soybean | cytosol | 76.19 | 76.19 |
| KRH34096 | Soybean | cytosol | 76.19 | 76.19 |
| VIT_14s0081g00080.t01 | Wine grape | cytosol | 73.81 | 73.81 |
| PGSC0003DMT400050100 | Potato | cytosol | 73.02 | 71.88 |
| Solyc01g097300.2.1 | Tomato | cytosol | 72.22 | 71.09 |
| Bra030740.1-P | Field mustard | cytosol | 72.22 | 69.47 |
| CDY31129 | Canola | cytosol | 72.22 | 69.47 |
| AT1G08780.1 | Thale cress | cytosol | 70.63 | 68.99 |
| Bra018601.1-P | Field mustard | cytosol | 69.84 | 68.22 |
| CDX95034 | Canola | cytosol | 69.84 | 68.22 |
| CDX93538 | Canola | cytosol | 69.84 | 68.22 |
| GSMUA_Achr4P17760_001 | Banana | cytosol | 80.95 | 64.15 |
| CDY66241 | Canola | cytosol | 71.43 | 57.69 |
| HORVU5Hr1G093710.1 | Barley | cytosol, plastid, vacuole | 36.51 | 23.23 |
Protein Annotations
| Gene3D:1.10.287.370 | MapMan:20.3.2.4 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006457 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016272 | GO:GO:0051082 | InterPro:IPR009053 | PFAM:PF01920 |
| InterPro:PFDN4 | InterPro:PFD_beta-like | PIRSF:PIRSF016477 | PANTHER:PTHR21100 | InterPro:Prefoldin | SUPFAM:SSF46579 |
| EnsemblPlantsGene:TraesCS5D01G388600 | EnsemblPlants:TraesCS5D01G388600.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:+:458089202..458091180
Molecular Weight (calculated)
14423.9 Da
IEP (calculated)
4.148
GRAVY (calculated)
-0.763
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQGDGTEAQ VTWDDQQNIN RFGRLNNRLH ELADEIRLAK EANENLEDAG NELILSDEDV VRFQIGEVFA HMPVDDVEAR LEQMKEDAAK KLEKLEEEKE
101: SILAQMAELK KILKAKFGDA INLEED
101: SILAQMAELK KILKAKFGDA INLEED
001: MQQQGSKSGS EMEVTWEDQQ NINIFSRLNN RVHDLDDDIK SAKEKCENLE DAGNELILAD EEMVRFQIGE VFAHVPRDDV ETKIEEMKEA TCKSLEKLEQ
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
Arabidopsis Description
AIP3Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4B5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.