Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra013248.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08780.1 | Bra013248.1-P | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93538 | Canola | cytosol | 99.22 | 99.22 |
| Bra030740.1-P | Field mustard | cytosol | 88.37 | 87.02 |
| AT1G08780.1 | Thale cress | cytosol | 84.5 | 84.5 |
| PGSC0003DMT400050100 | Potato | cytosol | 77.52 | 78.12 |
| KRG92689 | Soybean | cytosol | 75.97 | 77.78 |
| VIT_14s0081g00080.t01 | Wine grape | cytosol | 75.97 | 77.78 |
| Solyc01g097300.2.1 | Tomato | cytosol | 76.74 | 77.34 |
| KRH34096 | Soybean | cytosol | 75.19 | 76.98 |
| Os03t0628900-01 | Rice | cytosol | 70.54 | 72.22 |
| EER91208 | Sorghum | cytosol | 68.99 | 70.63 |
| TraesCS5D01G388600.1 | Wheat | cytosol | 68.22 | 69.84 |
| Zm00001d013708_P001 | Maize | cytosol | 68.22 | 69.84 |
| GSMUA_Achr4P17760_001 | Banana | cytosol | 72.09 | 58.49 |
| HORVU5Hr1G093710.1 | Barley | cytosol, plastid, vacuole | 24.81 | 16.16 |
Protein Annotations
| Gene3D:1.10.287.370 | MapMan:20.3.2.4 | EnsemblPlantsGene:Bra018601 | EnsemblPlants:Bra018601.1 | EnsemblPlants:Bra018601.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016272 |
| GO:GO:0051082 | InterPro:IPR009053 | UniProt:M4DQ10 | PFAM:PF01920 | InterPro:PFDN4 | InterPro:PFD_beta-like |
| PIRSF:PIRSF016477 | PANTHER:PTHR21100 | InterPro:Prefoldin | SUPFAM:SSF46579 | UniParc:UPI000253E7A8 | : |
Description
AT1G08780 (E=2e-060) AIP3, PDF4 | AIP3 (ABI3-INTERACTING PROTEIN 3); unfolded protein binding
Coordinates
chrA06:-:3037767..3038562
Molecular Weight (calculated)
15123.7 Da
IEP (calculated)
4.296
GRAVY (calculated)
-0.874
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQGKSSGS EMEVTWQDQQ NINTFSRFNN RFHELEDEIK FAKEKCDNLE DAGNELILAD EEMVRFQIGE VFAHVPKDEV ETRIEEMKEA TCKTLEKLEQ
101: EKQSLISQMA ELKKVLYAKF KDSINLEED
101: EKQSLISQMA ELKKVLYAKF KDSINLEED
001: MQQQGSKSGS EMEVTWEDQQ NINIFSRLNN RVHDLDDDIK SAKEKCENLE DAGNELILAD EEMVRFQIGE VFAHVPRDDV ETKIEEMKEA TCKSLEKLEQ
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
Arabidopsis Description
AIP3Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4B5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.