Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr7P23040_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08780.1 | GSMUA_Achr7P23040_001 | AT3G24650.1 | 10743655 |
| AT1G08780.1 | GSMUA_AchrUn_... | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91208 | Sorghum | cytosol | 67.3 | 84.92 |
| VIT_14s0081g00080.t01 | Wine grape | cytosol | 66.67 | 84.13 |
| Zm00001d013708_P001 | Maize | cytosol | 66.04 | 83.33 |
| KRG92689 | Soybean | cytosol | 65.41 | 82.54 |
| KRH34096 | Soybean | cytosol | 65.41 | 82.54 |
| Solyc01g097300.2.1 | Tomato | cytosol | 66.04 | 82.03 |
| Os03t0628900-01 | Rice | cytosol | 64.78 | 81.75 |
| PGSC0003DMT400050100 | Potato | cytosol | 65.41 | 81.25 |
| TraesCS5D01G388600.1 | Wheat | cytosol | 64.15 | 80.95 |
| Bra030740.1-P | Field mustard | cytosol | 61.64 | 74.81 |
| CDY31129 | Canola | cytosol | 61.64 | 74.81 |
| Bra018601.1-P | Field mustard | cytosol | 58.49 | 72.09 |
| CDX95034 | Canola | cytosol | 58.49 | 72.09 |
| CDX93538 | Canola | cytosol | 58.49 | 72.09 |
| AT1G08780.1 | Thale cress | cytosol | 57.86 | 71.32 |
| CDY66241 | Canola | cytosol | 61.01 | 62.18 |
| HORVU5Hr1G093710.1 | Barley | cytosol, plastid, vacuole | 25.79 | 20.71 |
Protein Annotations
| Gene3D:1.10.287.370 | MapMan:20.3.2.4 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006457 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016272 | GO:GO:0051082 | EnsemblPlantsGene:GSMUA_Achr4G17760_001 | EnsemblPlants:GSMUA_Achr4P17760_001 |
| EnsemblPlants:GSMUA_Achr4T17760_001 | InterPro:IPR009053 | UniProt:M0SPT9 | PFAM:PF01920 | InterPro:PFDN4 | InterPro:PFD_beta-like |
| PIRSF:PIRSF016477 | PANTHER:PTHR21100 | InterPro:Prefoldin | SUPFAM:SSF46579 | UniParc:UPI000295DFF2 | SEG:seg |
Description
Probable prefoldin subunit 4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17760_001]
Coordinates
chr4:+:17994309..17998811
Molecular Weight (calculated)
18177.1 Da
IEP (calculated)
4.222
GRAVY (calculated)
-0.808
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MYFAEGVEEL IRSSSADRFG AACGSSSEAS VPKMQKGEGS EAQVTWEDQQ NINKFGRLNN RFHELEDEIK VAKETNENLE DASNELILSD EDIVRFQIGE
101: VFAHVPREEV ENRLEKMKED ASKELEKLEE EKESILAQMA ELKKILYGKF KDSINLEED
101: VFAHVPREEV ENRLEKMKED ASKELEKLEE EKESILAQMA ELKKILYGKF KDSINLEED
001: MQQQGSKSGS EMEVTWEDQQ NINIFSRLNN RVHDLDDDIK SAKEKCENLE DAGNELILAD EEMVRFQIGE VFAHVPRDDV ETKIEEMKEA TCKSLEKLEQ
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
Arabidopsis Description
AIP3Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4B5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.