CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93029
CDY15121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08780.1	CDX93029	AT3G24650.1	10743655
AT1G08780.1	CDY15121	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018601.1-P	Field mustard	cytosol	99.22	99.22
CDX95034	Canola	cytosol	97.67	97.67
CDY31129	Canola	cytosol	89.15	87.79
AT1G08780.1	Thale cress	cytosol	85.27	85.27
PGSC0003DMT400050100	Potato	cytosol	78.29	78.91
VIT_14s0081g00080.t01	Wine grape	cytosol	76.74	78.57
Solyc01g097300.2.1	Tomato	cytosol	77.52	78.12
KRG92689	Soybean	cytosol	75.97	77.78
KRH34096	Soybean	cytosol	75.19	76.98
Os03t0628900-01	Rice	cytosol	71.32	73.02
CDY66241	Canola	cytosol	86.05	71.15
EER91208	Sorghum	cytosol	68.99	70.63
TraesCS5D01G388600.1	Wheat	cytosol	68.22	69.84
Zm00001d013708_P001	Maize	cytosol	68.22	69.84
GSMUA_Achr4P17760_001	Banana	cytosol	72.09	58.49
HORVU5Hr1G093710.1	Barley	cytosol, plastid, vacuole	24.81	16.16

Protein Annotations

Gene3D:1.10.287.370	MapMan:20.3.2.4	GO:A0A078E202	EnsemblPlants:CDX93538	ProteinID:CDX93538	ProteinID:CDX93538.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0016272	GO:GO:0051082	EnsemblPlantsGene:GSBRNA2T00156214001	InterPro:IPR009053
PFAM:PF01920	InterPro:PFDN4	InterPro:PFD_beta-like	PIRSF:PIRSF016477	PANTHER:PTHR21100	InterPro:Prefoldin
SUPFAM:SSF46579	UniParc:UPI0004EE874B	:	:	:	:

Description

BnaA06g05100D

Coordinates

chrLK031876:+:621131..622352

Molecular Weight (calculated)

15109.7 Da

IEP (calculated)

4.296

GRAVY (calculated)

-0.876

Length

129 amino acids

Sequence
(BLAST)

001: MQQQGKSSGS EMEVTWQDQQ NINTFSRFNN RFHELEDEIK FAKEKCDNLE DAGNELILAD EEMVRFQIGE VFAHVPKDEV ETRIEEMKEA TCKTLEKLEQ
101: EKQSLVSQMA ELKKVLYAKF KDSINLEED

Best Arabidopsis Sequence Match ( AT1G08780.1 )
(BLAST)

001: MQQQGSKSGS EMEVTWEDQQ NINIFSRLNN RVHDLDDDIK SAKEKCENLE DAGNELILAD EEMVRFQIGE VFAHVPRDDV ETKIEEMKEA TCKSLEKLEQ
101: EKESIVTQMA ALKKVLYAKF KDSINLEED

Arabidopsis Description

AIP3Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4B5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.