Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08780.1 | KRG99861 | AT3G24650.1 | 10743655 |
| AT1G08780.1 | KRH46807 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34096 | Soybean | cytosol | 98.41 | 98.41 |
| VIT_14s0081g00080.t01 | Wine grape | cytosol | 88.89 | 88.89 |
| PGSC0003DMT400050100 | Potato | cytosol | 81.75 | 80.47 |
| Solyc01g097300.2.1 | Tomato | cytosol | 80.95 | 79.69 |
| Zm00001d013708_P001 | Maize | cytosol | 76.98 | 76.98 |
| EER91208 | Sorghum | cytosol | 76.98 | 76.98 |
| TraesCS5D01G388600.1 | Wheat | cytosol | 76.19 | 76.19 |
| Bra018601.1-P | Field mustard | cytosol | 77.78 | 75.97 |
| CDX95034 | Canola | cytosol | 77.78 | 75.97 |
| CDX93538 | Canola | cytosol | 77.78 | 75.97 |
| Os03t0628900-01 | Rice | cytosol | 73.81 | 73.81 |
| CDY31129 | Canola | cytosol | 75.4 | 72.52 |
| Bra030740.1-P | Field mustard | cytosol | 75.4 | 72.52 |
| AT1G08780.1 | Thale cress | cytosol | 73.02 | 71.32 |
| GSMUA_Achr4P17760_001 | Banana | cytosol | 82.54 | 65.41 |
| CDY66241 | Canola | cytosol | 74.6 | 60.26 |
| HORVU5Hr1G093710.1 | Barley | cytosol, plastid, vacuole | 27.78 | 17.68 |
Protein Annotations
| Gene3D:1.10.287.370 | EntrezGene:100499849 | MapMan:20.3.2.4 | EMBL:ACUP02012766 | EMBL:BT089823 | UniProt:C6SXC9 |
| ncoils:Coil | EnsemblPlantsGene:GLYMA_20G225500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016272 | GO:GO:0051082 | GO:GO:0051087 | InterPro:IPR009053 | EnsemblPlants:KRG92689 | ProteinID:KRG92689 |
| ProteinID:KRG92689.1 | PFAM:PF01920 | InterPro:PFDN4 | InterPro:PFD_beta-like | PIRSF:PIRSF016477 | PANTHER:PTHR21100 |
| InterPro:Prefoldin | SUPFAM:SSF46579 | UniParc:UPI0001B152B3 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr20:+:45970352..45971885
Molecular Weight (calculated)
14681.0 Da
IEP (calculated)
4.118
GRAVY (calculated)
-0.879
Length
126 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQGGGSETE VTWEDQQNIN KFGRLNNRFH ELEDEIKIAK ETNDNLEDAS NELILTDEEV IRFQIGEVFA HVPKDEVENR IEQIKEVTSQ KLEKLEEEKE
101: SVLAQMAELK KILYAKFNDS INLEED
101: SVLAQMAELK KILYAKFNDS INLEED
001: MQQQGSKSGS EMEVTWEDQQ NINIFSRLNN RVHDLDDDIK SAKEKCENLE DAGNELILAD EEMVRFQIGE VFAHVPRDDV ETKIEEMKEA TCKSLEKLEQ
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
Arabidopsis Description
AIP3Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4B5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.