Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08780.1 | CDX93029 | AT3G24650.1 | 10743655 |
| AT1G08780.1 | CDY15121 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93538 | Canola | cytosol | 97.67 | 97.67 |
| CDY31129 | Canola | cytosol | 88.37 | 87.02 |
| AT1G08780.1 | Thale cress | cytosol | 84.5 | 84.5 |
| PGSC0003DMT400050100 | Potato | cytosol | 77.52 | 78.12 |
| KRG92689 | Soybean | cytosol | 75.97 | 77.78 |
| Solyc01g097300.2.1 | Tomato | cytosol | 76.74 | 77.34 |
| KRH34096 | Soybean | cytosol | 75.19 | 76.98 |
| VIT_14s0081g00080.t01 | Wine grape | cytosol | 75.19 | 76.98 |
| Os03t0628900-01 | Rice | cytosol | 70.54 | 72.22 |
| EER91208 | Sorghum | cytosol | 68.99 | 70.63 |
| CDY66241 | Canola | cytosol | 85.27 | 70.51 |
| TraesCS5D01G388600.1 | Wheat | cytosol | 68.22 | 69.84 |
| Zm00001d013708_P001 | Maize | cytosol | 68.22 | 69.84 |
| GSMUA_Achr4P17760_001 | Banana | cytosol | 72.09 | 58.49 |
| HORVU5Hr1G093710.1 | Barley | cytosol, plastid, vacuole | 25.58 | 16.67 |
Protein Annotations
| Gene3D:1.10.287.370 | MapMan:20.3.2.4 | GO:A0A078E3E5 | EnsemblPlants:CDX95034 | ProteinID:CDX95034 | ProteinID:CDX95034.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006457 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016272 | GO:GO:0051082 | EnsemblPlantsGene:GSBRNA2T00100552001 | InterPro:IPR009053 |
| PFAM:PF01920 | InterPro:PFDN4 | InterPro:PFD_beta-like | PIRSF:PIRSF016477 | PANTHER:PTHR21100 | InterPro:Prefoldin |
| SUPFAM:SSF46579 | UniParc:UPI0004EE4FBF | : | : | : | : |
Description
BnaC05g06370D
Coordinates
chrLK031886:+:795581..796763
Molecular Weight (calculated)
15109.7 Da
IEP (calculated)
4.260
GRAVY (calculated)
-0.817
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLQGKSSGS EMEVTWQDQQ NINTFSRFNN RFHELEDEIK FAKEKCDNLE DAGNELILAD EEMVRFQIGE VFAHVPKDEV ETRIEEMKEA TCKTLEKLEQ
101: EKESLISQMA ELKKVLYAKF KDSINLEED
101: EKESLISQMA ELKKVLYAKF KDSINLEED
001: MQQQGSKSGS EMEVTWEDQQ NINIFSRLNN RVHDLDDDIK SAKEKCENLE DAGNELILAD EEMVRFQIGE VFAHVPRDDV ETKIEEMKEA TCKSLEKLEQ
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
101: EKESIVTQMA ALKKVLYAKF KDSINLEED
Arabidopsis Description
AIP3Probable prefoldin subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4B5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.