CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70951
CDX87210
CDX87889
CDX88834
CDX92939
CDX93538
CDX95034
CDY02151
CDY04094
CDY10635
CDY24303
CDY35542
CDY37407
CDY55832
CDY64140

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	CDX93538	AT1G08780.1	10743655
AT3G24650.1	CDX95034	AT1G08780.1	10743655
AT3G24650.1	CDX92939	AT3G22320.1	10743655
AT3G24650.1	CDY10635	AT3G22320.1	10743655
AT3G24650.1	CDY24303	AT3G22320.1	10743655
AT3G24650.1	CDY35542	AT3G22320.1	10743655
AT3G24650.1	CDY37407	AT3G22320.1	10743655
AT3G24650.1	CDY55832	AT3G54620.1	12657652
AT3G24650.1	CDX70951	AT5G20910.1	10743655
AT3G24650.1	CDX87889	AT5G20910.1	10743655
AT3G24650.1	CDX88834	AT5G20910.1	10743655
AT3G24650.1	CDY04094	AT5G20910.1	10743655
AT3G24650.1	CDX87210	AT5G61380.1	10743655
AT3G24650.1	CDY02151	AT5G61380.1	10743655
AT3G24650.1	CDY64140	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013248.1-P	Field mustard	nucleus	97.47	91.35
CDX93029	Canola	nucleus	97.32	91.09
AT3G24650.1	Thale cress	nucleus	87.2	81.39
VIT_07s0005g05400.t01	Wine grape	nucleus	48.96	44.88
PGSC0003DMT400051746	Potato	nucleus	36.76	42.59
KRH46807	Soybean	nucleus	47.47	41.92
KRG99861	Soybean	nucleus	47.02	41.69
Solyc06g083590.2.1	Tomato	nucleus	35.57	41.28
PGSC0003DMT400051934	Potato	nucleus	37.5	40.65
Solyc06g083600.1.1	Tomato	nucleus	37.35	40.48
OQU89229	Sorghum	nucleus	22.47	37.56
GSMUA_AchrUn_...	Banana	nucleus	35.42	35.1
Zm00001d042396_P003	Maize	nucleus	33.18	32.27
EES04085	Sorghum	nucleus	33.18	31.81
TraesCS3B01G452200.1	Wheat	nucleus	31.99	31.25
HORVU3Hr1G092690.2	Barley	nucleus	31.7	31.23
Os01t0911700-02	Rice	nucleus	33.78	31.22
TraesCS3D01G412800.1	Wheat	nucleus	31.7	30.78
TraesCS3A01G417300.1	Wheat	nucleus	31.7	30.78
GSMUA_Achr7P23040_001	Banana	nucleus	33.33	30.56
CDY15679	Canola	nucleus	13.84	26.65
CDX94608	Canola	nucleus	13.69	26.36
CDY28525	Canola	nucleus	12.05	26.21
CDY13657	Canola	nucleus	12.2	26.03
CDY34212	Canola	nucleus	11.9	25.97
CDY53003	Canola	nucleus	12.05	25.8
CDY66878	Canola	nucleus	13.69	25.56
CDY46611	Canola	nucleus	13.54	25.35
CDX82834	Canola	nucleus	11.01	10.24
CDY10738	Canola	nucleus	11.76	10.04
CDY02066	Canola	nucleus	11.61	9.95
CDX79071	Canola	nucleus	10.57	9.83
CDX97828	Canola	nucleus	11.16	9.83
CDX84832	Canola	nucleus	11.46	9.81
CDY23997	Canola	nucleus	11.46	9.71
CDY29672	Canola	nucleus	11.31	9.64
CDX72340	Canola	nucleus	10.71	9.36
CDY13468	Canola	nucleus	10.71	9.35
CDX68809	Canola	cytosol	0.74	3.82

Protein Annotations

MapMan:15.5.5.5	Gene3D:2.40.330.10	GO:A0A078FPU9	UniProt:A0A078FPU9	InterPro:B3_DNA-bd	EnsemblPlants:CDY15121
ProteinID:CDY15121	ProteinID:CDY15121.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00085286001	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFscan:PS50863	PANTHER:PTHR31140
PANTHER:PTHR31140:SF1	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EE72ED	SEG:seg	:

Description

BnaC03g44820DBnaC03g44820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPU9]

Coordinates

chrLK032051:-:779194..782286

Molecular Weight (calculated)

74262.1 Da

IEP (calculated)

6.312

GRAVY (calculated)

-0.712

Length

672 amino acids

Sequence
(BLAST)

001: MKTLHVAAKG GDLAEGCGIL AGDADETILM DGIGDVGREI WLDDHGGDHG HGHREEDDII VHHDPSMFYG DLPTLPDFPC MSSSSSSSTS PAPVNAIVSS
101: ASSSSAASSS TSSAASWAIL KSDGEDPTTQ NQNQYASGNC DVESSAALHN EFFDTSAIFN QDEDTQNPNL MDQTLERQDQ IVVPMLENNN NNSGGDMQVM
201: NHSLEQEDDL AAVFLEWLKN NKETVSADDL RKVKIKKATI ESAAKRLGGG KEAMKQLLKL ILEWVQTNHL QRRRTNNNNL SYQQDPFQNP NLIPPSDQTC
301: FSPSTWVPPP PQPPPPQQPA FVSDPGYGYM PAPNYPPQEY LPLLESPPTW PPPQSGPMPL QQFTMPNPQY TPFQDPGGGF TGYNMNPYQY PYLPSSGQMR
401: DQGLLRLCSS ATKEARKKRM ARQRRFLSHH HRHNNNQQNQ TQIGEVCGAV DPQLNHVPTT ATGGTWMYWP NVPAMPPPVS SQLPAMETQL PTMDRAGSSS
501: VMPRQQVVPD RRQGWKPEKN LRFLLQKVLK QSDVGNLGRI VLPKKEAETH LPELEARDGI SLAMEDIGTS RVWNLRYRFW PNNKSRMYLL ENTGDFVKTN
601: GLQEGDFIVI YSDVKCGKYL IRGVKVRQPA GQKPEASSSA AVTKRQSKSQ RSINNNSPSA NIVASPPSQA VK

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.