CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY28683

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	CDY28683	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29672	Canola	nucleus	91.74	88.83
CDY10738	Canola	nucleus	79.55	77.13
CDY02066	Canola	nucleus	79.03	76.91
CDX84832	Canola	nucleus	78.9	76.69
CDY23997	Canola	nucleus	77.72	74.78
AT2G30470.1	Thale cress	nucleus	74.18	71.65
CDX68809	Canola	cytosol	7.86	45.8
CDX72340	Canola	nucleus	45.48	45.12
CDY13468	Canola	nucleus	45.35	44.94
Solyc06g082520.2.1	Tomato	nucleus	47.84	43.2
VIT_06s0004g08100.t01	Wine grape	nucleus	48.23	42.35
KRH30646	Soybean	nucleus	50.2	42.04
KRH72829	Soybean	nucleus	39.45	41.92
GSMUA_Achr5P27930_001	Banana	nucleus	31.72	41.72
KRH17186	Soybean	nucleus	39.58	41.71
KRG98129	Soybean	nucleus	50.33	41.07
GSMUA_Achr8P01750_001	Banana	nucleus	45.09	40.14
TraesCS2D01G105300.1	Wheat	nucleus	45.22	37.87
Os07t0679700-01	Rice	nucleus	46.92	37.72
TraesCS2A01G105600.1	Wheat	nucleus	46.79	37.62
TraesCS2B01G122500.1	Wheat	nucleus	46.4	37.26
EER99914	Sorghum	nucleus	46.66	37.2
Zm00001d022440_P005	Maize	plastid	46.13	36.55
HORVU2Hr1G017760.4	Barley	plastid	45.74	33.69
Zm00001d007173_P003	Maize	mitochondrion, nucleus	43.38	32.71
CDX82834	Canola	nucleus	28.96	30.57
CDX79071	Canola	nucleus	28.7	30.33
PGSC0003DMT400057590	Potato	nucleus	12.58	20.78
CDY28525	Canola	nucleus	8.26	20.39
CDY13657	Canola	nucleus	8.39	20.32
CDY34212	Canola	nucleus	8.13	20.13
CDY53003	Canola	nucleus	8.26	20.06
Zm00001d037893_P001	Maize	mitochondrion	6.55	17.86
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.68	17.41
Zm00001d045970_P001	Maize	mitochondrion	5.37	15.89
CDY15679	Canola	nucleus	6.55	14.33
CDY66878	Canola	nucleus	6.68	14.17
CDX94608	Canola	nucleus	6.42	14.04
CDY46611	Canola	nucleus	6.29	13.37
CDY15121	Canola	nucleus	9.83	11.16
CDX93029	Canola	nucleus	10.35	11.0
Zm00001d029836_P001	Maize	plastid	0.52	4.55

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	GO:A0A078EEL9	InterPro:B3_DNA-bd	EnsemblPlants:CDX97828
ProteinID:CDX97828	ProteinID:CDX97828.1	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00105140001	InterPro:IPR003340	InterPro:IPR011124
InterPro:IPR015300	PFAM:PF02362	PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336
PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EEDD73	InterPro:Znf_CW	SEG:seg

Description

BnaC04g41110D

Coordinates

chrLK031901:+:776588..780384

Molecular Weight (calculated)

83717.0 Da

IEP (calculated)

6.757

GRAVY (calculated)

-0.601

Length

763 amino acids

Sequence
(BLAST)

001: MCMNASCGST STVEWKKGWP LRSGALADLC FRCGSAYETS LFCETFHLDQ SGWRECYLCN KRLHCGCIAS KLVVEFMDYG GVGCSTCTNC HQPNLGKIGE
101: NPGLFSRLPM NRQHTNGENG MNVGKADLFS QPLVQGDDKR EEFMPHRGFS NLIKTDRLDG GEILESSSTP SQPPSLNMPL AALPYSLNFA TATKKLMDAS
201: SQPHAVQSSS SSILQTPSKS VLGTPPGTSK SAQARIGRPP NEGRGRSHLL PRYWPKYTDK ELQQISGNLN LNIVPLFEKT LSASDAGRIG RLVLPKACAE
301: AYFPPISQSE GIPLKIQDVR GKEWIFQFRF WPNNNSRMYV LEGVTPCIQS MMLQAGDTVT FSRVDPGGKL IMGFRKATHT KDIQGCGLTN GTLNEDTSSS
401: GVTETPTSIN ASSCPSQNPE ELKGLPEHLN SNHGGSSLKK SEVNGVKDKK RTRTVGAKSK RLLLHSEESM EVRITWEETQ ELIRPSPSEK PTVVVIEEHE
501: FEEFYEPPVF GKRTIITSKP SGEQERWASC DDCSKWRKLP VEALLPAKWT CSDNVWDESR CSCSAPEESL KELENVLRMS KEYKKRRTGV SQTVRTEEEL
601: TGLDALASAA ALGDTLGEEE EPATTTRHPR HRVGCSCIVC IQPPSGKGRH NSSCLCTVCS TVKRRFKTLM MRRKKKQLER EEIEAAAAAD QENKEDGKTG
701: RIDLNSDPCN RGEVEAVGVE EKDESGKGEA GECLGVAQAG DVVGVTELEG EGEKIGEESK GSS

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.