Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30470.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10738 | Canola | nucleus | 96.68 | 96.32 |
| Bra018313.1-P | Field mustard | nucleus | 95.66 | 94.94 |
| CDX84832 | Canola | nucleus | 82.91 | 82.8 |
| CDY23997 | Canola | nucleus | 81.38 | 80.45 |
| CDX97828 | Canola | nucleus | 76.91 | 79.03 |
| CDY29672 | Canola | nucleus | 76.53 | 76.14 |
| AT2G30470.1 | Thale cress | nucleus | 75.0 | 74.43 |
| CDX68809 | Canola | cytosol | 7.91 | 47.33 |
| CDY13468 | Canola | nucleus | 45.79 | 46.62 |
| CDX72340 | Canola | nucleus | 45.66 | 46.55 |
| Solyc06g082520.2.1 | Tomato | nucleus | 48.85 | 45.33 |
| KRH30646 | Soybean | nucleus | 51.28 | 44.13 |
| VIT_06s0004g08100.t01 | Wine grape | nucleus | 48.21 | 43.5 |
| KRG98129 | Soybean | nucleus | 51.53 | 43.21 |
| KRH72829 | Soybean | nucleus | 39.41 | 43.04 |
| GSMUA_Achr5P27930_001 | Banana | nucleus | 31.76 | 42.93 |
| KRH17186 | Soybean | nucleus | 38.78 | 41.99 |
| GSMUA_Achr8P01750_001 | Banana | nucleus | 45.03 | 41.19 |
| Os07t0679700-01 | Rice | nucleus | 47.32 | 39.09 |
| TraesCS2D01G105300.1 | Wheat | nucleus | 45.41 | 39.08 |
| TraesCS2A01G105600.1 | Wheat | nucleus | 46.68 | 38.57 |
| EER99914 | Sorghum | nucleus | 46.81 | 38.35 |
| TraesCS2B01G122500.1 | Wheat | nucleus | 46.43 | 38.32 |
| Zm00001d022440_P005 | Maize | plastid | 45.92 | 37.38 |
| HORVU2Hr1G017760.4 | Barley | plastid | 45.79 | 34.65 |
| Zm00001d007173_P003 | Maize | mitochondrion, nucleus | 43.75 | 33.89 |
| CDX82834 | Canola | nucleus | 28.7 | 31.12 |
| CDX79071 | Canola | nucleus | 28.32 | 30.75 |
| CDY13657 | Canola | nucleus | 8.67 | 21.59 |
| CDY53003 | Canola | nucleus | 8.55 | 21.34 |
| CDY28525 | Canola | nucleus | 8.29 | 21.04 |
| CDY34212 | Canola | nucleus | 8.16 | 20.78 |
| PGSC0003DMT400057590 | Potato | nucleus | 11.86 | 20.13 |
| Zm00001d037893_P001 | Maize | mitochondrion | 6.38 | 17.86 |
| Zm00001d045970_P001 | Maize | mitochondrion | 5.74 | 17.44 |
| Zm00001d038148_P001 | Maize | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 6.12 | 16.38 |
| CDY66878 | Canola | nucleus | 6.76 | 14.72 |
| CDY15679 | Canola | nucleus | 6.51 | 14.61 |
| CDX94608 | Canola | nucleus | 6.51 | 14.61 |
| CDY46611 | Canola | nucleus | 6.38 | 13.93 |
| CDY15121 | Canola | nucleus | 9.95 | 11.61 |
| CDX93029 | Canola | nucleus | 10.46 | 11.42 |
| Zm00001d029836_P001 | Maize | plastid | 0.38 | 3.41 |
Protein Annotations
| MapMan:15.5.5.4 | Gene3D:2.40.330.10 | Gene3D:3.30.40.100 | GO:A0A078ELL9 | InterPro:B3_DNA-bd | EnsemblPlants:CDY02066 |
| ProteinID:CDY02066 | ProteinID:CDY02066.1 | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00113430001 | InterPro:IPR003340 | InterPro:IPR011124 | InterPro:IPR015300 |
| PFAM:PF02362 | PFAM:PF07496 | PFscan:PS50863 | PFscan:PS51050 | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF28 |
| SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0004EEF61E | InterPro:Znf_CW | SEG:seg | : |
Description
BnaC04g14350D
Coordinates
chrLK031931:-:1066098..1069525
Molecular Weight (calculated)
85782.1 Da
IEP (calculated)
7.574
GRAVY (calculated)
-0.647
Length
784 amino acids
Sequence
(BLAST)
(BLAST)
001: MFEVKMGSKM CMNASCGSTS SVEWKKGWPL RSGALADLCF RCGSAYETSR FCETFHMEQS GWRECYLCNK RLHCGCIASK LMVEFMDYGG VGCTSCTNSH
101: SKRGENPGVF SRLPMNMQQT NGERSEANLF SQPLVSGDDK REEFTPHRGF GNLMKPDNNV TTTVYTHDSS SSSPSQPSLN MALATLPYSP SFATPVVDGN
201: KLMAAGGASS SQSHLFQCSA SSILQKPSKT VLGTPPPGTS KSAQARIGRP PVEGRGKGHL LPRYWPKYTD KELQQISGNL NLNIVPLFEK TLSASDAGRI
301: GRLVLPKACA EAYFPPISQS EGIPLKVQDV RGKEWTFQFR FWPNNNSRMY VLEGVTPCIQ SMRLQAGDTV TFSRVDPGGK LIMGARKATY TVDMQGCGFA
401: NGASNEDTSS SGVTENLTSI NASSCPSQIL EGLPEHLGSP HGGNGLKKSE INGGDDPSRG KEKKRTRTLG AKNKRLLLHS EESMELRVTW EEAQELLRPS
501: ANAKPTVVVI EEHEFEEFDE PPVFGKRTIL TSRPSGEQER WGSCDDCSKW RRLPLDALLP AKWTCSDNVW DSSRCSCSAP EESLKELENV LRAGKEYKKR
601: RIGVSQTARN EQEPSGLDAL ASAAVLGDAL DDSSEVATTT RHPRHRVGCS CIVCIQPPSG KGRHKPTCGC TVCSTVKRRF KTLMMRRKKR QLERDGTAAV
701: DEENKEGVEP EKNEGEKEGR IDLNSDPYNR EDAEAVAVEK GEESKKSEEG VCWGVSQGGG VLGETEVRGG EAEKTTSEEQ KVAS
101: SKRGENPGVF SRLPMNMQQT NGERSEANLF SQPLVSGDDK REEFTPHRGF GNLMKPDNNV TTTVYTHDSS SSSPSQPSLN MALATLPYSP SFATPVVDGN
201: KLMAAGGASS SQSHLFQCSA SSILQKPSKT VLGTPPPGTS KSAQARIGRP PVEGRGKGHL LPRYWPKYTD KELQQISGNL NLNIVPLFEK TLSASDAGRI
301: GRLVLPKACA EAYFPPISQS EGIPLKVQDV RGKEWTFQFR FWPNNNSRMY VLEGVTPCIQ SMRLQAGDTV TFSRVDPGGK LIMGARKATY TVDMQGCGFA
401: NGASNEDTSS SGVTENLTSI NASSCPSQIL EGLPEHLGSP HGGNGLKKSE INGGDDPSRG KEKKRTRTLG AKNKRLLLHS EESMELRVTW EEAQELLRPS
501: ANAKPTVVVI EEHEFEEFDE PPVFGKRTIL TSRPSGEQER WGSCDDCSKW RRLPLDALLP AKWTCSDNVW DSSRCSCSAP EESLKELENV LRAGKEYKKR
601: RIGVSQTARN EQEPSGLDAL ASAAVLGDAL DDSSEVATTT RHPRHRVGCS CIVCIQPPSG KGRHKPTCGC TVCSTVKRRF KTLMMRRKKR QLERDGTAAV
701: DEENKEGVEP EKNEGEKEGR IDLNSDPYNR EDAEAVAVEK GEESKKSEEG VCWGVSQGGG VLGETEVRGG EAEKTTSEEQ KVAS
001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS
Arabidopsis Description
VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.