CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY28683

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30470.1	CDY28683	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84832	Canola	nucleus	92.43	93.38
Bra022801.1-P	Field mustard	nucleus	91.68	92.85
CDY02066	Canola	nucleus	80.45	81.38
CDY10738	Canola	nucleus	80.2	80.81
CDX97828	Canola	nucleus	74.78	77.72
CDY29672	Canola	nucleus	75.66	76.14
AT2G30470.1	Thale cress	nucleus	73.01	73.29
CDY13468	Canola	nucleus	45.4	46.75
CDX72340	Canola	nucleus	45.27	46.68
CDX68809	Canola	cytosol	7.57	45.8
Solyc06g082520.2.1	Tomato	nucleus	47.67	44.73
KRH30646	Soybean	nucleus	49.18	42.81
KRH72829	Soybean	nucleus	38.59	42.62
GSMUA_Achr5P27930_001	Banana	nucleus	30.52	41.72
KRH17186	Soybean	nucleus	38.08	41.71
KRG98129	Soybean	nucleus	49.18	41.71
VIT_06s0004g08100.t01	Wine grape	nucleus	45.65	41.66
GSMUA_Achr8P01750_001	Banana	nucleus	43.63	40.37
TraesCS2D01G105300.1	Wheat	nucleus	44.26	38.53
TraesCS2A01G105600.1	Wheat	nucleus	45.4	37.93
TraesCS2B01G122500.1	Wheat	nucleus	45.15	37.68
Os07t0679700-01	Rice	nucleus	44.77	37.41
EER99914	Sorghum	nucleus	44.39	36.78
Zm00001d022440_P005	Maize	plastid	43.76	36.03
HORVU2Hr1G017760.4	Barley	plastid	44.77	34.27
Zm00001d007173_P003	Maize	mitochondrion, nucleus	41.11	32.21
CDX82834	Canola	nucleus	27.36	30.01
CDX79071	Canola	nucleus	26.86	29.5
CDY28525	Canola	nucleus	8.2	21.04
CDY13657	Canola	nucleus	8.32	20.95
CDY34212	Canola	nucleus	8.07	20.78
CDY53003	Canola	nucleus	8.2	20.7
PGSC0003DMT400057590	Potato	nucleus	11.6	19.91
Zm00001d037893_P001	Maize	mitochondrion	6.18	17.5
Zm00001d038148_P001	Maize	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.05	16.38
Zm00001d045970_P001	Maize	mitochondrion	5.3	16.28
CDY15679	Canola	nucleus	6.56	14.9
CDX94608	Canola	nucleus	6.56	14.9
CDY66878	Canola	nucleus	6.56	14.44
CDY46611	Canola	nucleus	6.18	13.65
CDY15121	Canola	nucleus	9.71	11.46
CDX93029	Canola	nucleus	10.21	11.28
Zm00001d029836_P001	Maize	plastid	0.5	4.55

Protein Annotations

MapMan:15.5.5.4	Gene3D:2.40.330.10	Gene3D:3.30.40.100	GO:A0A078GFU6	UniProt:A0A078GFU6	InterPro:B3_DNA-bd
EnsemblPlants:CDY23997	ProteinID:CDY23997	ProteinID:CDY23997.1	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00024513001	InterPro:IPR003340	InterPro:IPR011124
InterPro:IPR015300	PFAM:PF02362	PFAM:PF07496	PFscan:PS50863	PFscan:PS51050	PANTHER:PTHR23336
PANTHER:PTHR23336:SF28	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EDB387	InterPro:Znf_CW	SEG:seg

Description

BnaC03g16940DBnaC03g16940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFU6]

Coordinates

chrLK032152:+:411704..415812

Molecular Weight (calculated)

87436.6 Da

IEP (calculated)

7.638

GRAVY (calculated)

-0.594

Length

793 amino acids

Sequence
(BLAST)

001: MFEVKTGSKV CMNASCGSTS TVEWKKGWPL RSGSLADLCF RCGSAYETSL FCETFHLEQS GWRDCYLCNK RLHCGCIASK LMVEFMDYGG VGCTSCTNCH
101: QLNLNKRGEN PVVFSRLAMN SQHTNGESGI SSIRSEADLF SQPLVPGDDK REEFMAQRGF ANFMKPDNNN AGEMHEPSST PSQPSLNMAL ATLPYSPSFA
201: TPVVDGKTLM GAASQSQSHI GQCSASSILQ KPSKSVPGTP PGTSKSAQAR IGRPPVEGRG KGHLLPRYWP KYTDKELQQI SGNLNLNIVP LFEKTLSASD
301: AGRIGRLVLP KACAEAYFPP ISQSEGIPLK IQDVRGKEWT FQFRFWPNNN SRMYVLEGVT PCIQSMMLQA GDTVTFSRVD PGGKLIMGAR KAAYTVDMQV
401: WVSTSYIRAR THPAQPNPKL IRPNRDPIDL EPNPTSINAS SCPSQTPEEL KGLPEHLSLK KSEMNGGRIC DDPSRVKDKK RTRTIGAKNK RLLLHSEELR
501: VTWEEAQELL RPSPNAKPTV VVVEDHEFEE FDEPPVFGKR TIITSRPSGE QERWASCDDC TKWRRLPVDA LLPAKWTCSD NVWDVSRCSC CAPEESLKDL
601: ENVLRAGKEY KKRRIQAAKT EEEPSGLDAL ASAASAAVLG DALGGDSEVA TTTRHPRHRV GCSCIVCIQP PSGKGRHKPT CGCTVCSTVK RRFKTLMMRR
701: KKKQLERDEI AAAAEAYEEH NNKEAAEQGE TDENNGEKEG RIDLNCDPYN REDVEAVKEE SKRRECSGVA DDVLGLTELG GEAASCEELK AAT

Best Arabidopsis Sequence Match ( AT2G30470.1 )
(BLAST)

001: MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS GWRECYLCSK RLHCGCIASK VTIELMDYGG VGCSTCACCH
101: QLNLNTRGEN PGVFSRLPMK TLADRQHVNG ESGGRNEGDL FSQPLVMGGD KREEFMPHRG FGKLMSPEST TTGHRLDAAG EMHESSPLQP SLNMGLAVNP
201: FSPSFATEAV EGMKHISPSQ SNMVHCSASN ILQKPSRPAI STPPVASKSA QARIGRPPVE GRGRGHLLPR YWPKYTDKEV QQISGNLNLN IVPLFEKTLS
301: ASDAGRIGRL VLPKACAEAY FPPISQSEGI PLKIQDVRGR EWTFQFRYWP NNNSRMYVLE GVTPCIQSMM LQAGDTVTFS RVDPGGKLIM GSRKAANAGD
401: MQGCGLTNGT STEDTSSSGV TENPPSINGS SCISLIPKEL NGMPENLNSE TNGGRIGDDP TRVKEKKRTR TIGAKNKRLL LHSEESMELR LTWEEAQDLL
501: RPSPSVKPTI VVIEEQEIEE YDEPPVFGKR TIVTTKPSGE QERWATCDDC SKWRRLPVDA LLSFKWTCID NVWDVSRCSC SAPEESLKEL ENVLKVGREH
601: KKRRTGESQA AKSQQEPCGL DALASAAVLG DTIGEPEVAT TTRHPRHRAG CSCIVCIQPP SGKGRHKPTC GCTVCSTVKR RFKTLMMRRK KKQLERDVTA
701: AEDKKKKDME LAESDKSKEE KEVNTARIDL NSDPYNKEDV EAVAVEKEES RKRAIGQCSG VVAQDASDVL GVTELEGEGK NVREEPRVSS

Arabidopsis Description

VAL1B3 domain-containing transcription repressor VAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4L5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.