CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70951
CDX87210
CDX87889
CDX88834
CDX92939
CDX93538
CDX95034
CDY02151
CDY04094
CDY10635
CDY24303
CDY35542
CDY37407
CDY55832
CDY64140

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24650.1	CDX93538	AT1G08780.1	10743655
AT3G24650.1	CDX95034	AT1G08780.1	10743655
AT3G24650.1	CDX92939	AT3G22320.1	10743655
AT3G24650.1	CDY10635	AT3G22320.1	10743655
AT3G24650.1	CDY24303	AT3G22320.1	10743655
AT3G24650.1	CDY35542	AT3G22320.1	10743655
AT3G24650.1	CDY37407	AT3G22320.1	10743655
AT3G24650.1	CDY55832	AT3G54620.1	12657652
AT3G24650.1	CDX70951	AT5G20910.1	10743655
AT3G24650.1	CDX87889	AT5G20910.1	10743655
AT3G24650.1	CDX88834	AT5G20910.1	10743655
AT3G24650.1	CDY04094	AT5G20910.1	10743655
AT3G24650.1	CDX87210	AT5G61380.1	10743655
AT3G24650.1	CDY02151	AT5G61380.1	10743655
AT3G24650.1	CDY64140	AT5G61380.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013248.1-P	Field mustard	nucleus	99.72	99.86
CDY15121	Canola	nucleus	91.09	97.32
AT3G24650.1	Thale cress	nucleus	87.05	86.81
VIT_07s0005g05400.t01	Wine grape	nucleus	48.61	47.61
KRH46807	Soybean	nucleus	47.49	44.81
KRG99861	Soybean	nucleus	46.94	44.46
PGSC0003DMT400051746	Potato	nucleus	35.24	43.62
Solyc06g083590.2.1	Tomato	nucleus	34.12	42.31
PGSC0003DMT400051934	Potato	nucleus	36.35	42.1
Solyc06g083600.1.1	Tomato	nucleus	36.21	41.94
OQU89229	Sorghum	nucleus	21.31	38.06
GSMUA_AchrUn_...	Banana	nucleus	33.7	35.69
Zm00001d042396_P003	Maize	nucleus	32.17	33.43
EES04085	Sorghum	nucleus	32.31	33.1
Os01t0911700-02	Rice	nucleus	32.17	31.77
TraesCS3B01G452200.1	Wheat	nucleus	30.22	31.54
HORVU3Hr1G092690.2	Barley	nucleus	29.94	31.52
GSMUA_Achr7P23040_001	Banana	nucleus	32.03	31.38
TraesCS3D01G412800.1	Wheat	nucleus	29.94	31.07
TraesCS3A01G417300.1	Wheat	nucleus	29.94	31.07
CDY15679	Canola	nucleus	12.95	26.65
CDX94608	Canola	nucleus	12.81	26.36
CDY28525	Canola	nucleus	11.28	26.21
CDY13657	Canola	nucleus	11.42	26.03
CDY34212	Canola	nucleus	11.14	25.97
CDY53003	Canola	nucleus	11.28	25.8
CDY66878	Canola	nucleus	12.81	25.56
CDY46611	Canola	nucleus	12.67	25.35
CDX82834	Canola	nucleus	10.86	10.79
CDY10738	Canola	nucleus	11.56	10.55
CDY02066	Canola	nucleus	11.42	10.46
CDX79071	Canola	nucleus	10.45	10.39
CDX97828	Canola	nucleus	11.0	10.35
CDX84832	Canola	nucleus	11.28	10.32
CDY23997	Canola	nucleus	11.28	10.21
CDY29672	Canola	nucleus	11.14	10.15
CDX72340	Canola	nucleus	10.45	9.75
CDY13468	Canola	nucleus	10.45	9.74
CDX68809	Canola	cytosol	0.84	4.58

Protein Annotations

EnsemblPlants:CDX93029	EnsemblPlantsGene:GSBRNA2T00154921001	Gene3D:2.40.330.10	GO:A0A078DX84	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300
PANTHER:PTHR31140	PANTHER:PTHR31140:SF1	PFAM:PF02362	PFscan:PS50863	ProteinID:CDX93029	ProteinID:CDX93029.1
SEG:seg	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EE8F34	MapMan:15.5.5.5	:

Description

BnaA03g37510D

Coordinates

chrLK031874:+:802340..805726

Molecular Weight (calculated)

78998.4 Da

IEP (calculated)

5.063

GRAVY (calculated)

-0.686

Length

718 amino acids

Sequence
(BLAST)

001: MKTLHVAANG GDLAEGCGIL AGDADEAVLM DGMGEVGREI WSLDDHGGDG HGHREDDDII VHHDPSMFYG DLPTLPDFPC MSSSSSSSTS PAPLNAIVSS
101: ASSSSAASSS TSSAASWAIL KSDGEDPTPN QNQYASGNCD VESSAALQST ASMEIQLDNT QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFNQD
201: EDTQNLNLMD QTLEREDKIV VPMLENNNNN NNSGGDMQVM NPSLEQEDDL AAVFLEWLKN NKETVSADDL RKVKIKKATI ESAAKRLGGG KEAMKQLLKL
301: ILEWVQTNHL QRRRTTNNNN NLSYQQDPFQ NPNLIPPSDQ TCFSPSTWVP PPTQPPPPQQ PAFVSDPGYG YMPAPNYPPQ EYLPLLESPP TWPPPQSGPM
401: PLQQFTMPNP QYTPFQDPGG GFTGYNMNPY QYPYLPSSGQ MRDQGLLRLC SSATKEARKK RMARQRRFLS HHHRHNNNNN QQNQTQIGEV CGAVDPQLNH
501: VPTTATGGTW MYWPNVPAMP PPVSSSQLPA METQLPTMDR AGSSSVMPRQ QVVPDRRQGW KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK EAETHLPELE
601: ARDGISLAME DIGTSRVWNL RYRFWPNNKS RMYLLENTGD FVKTNGLQEG DFIVIYSDVK CGKYLIRGVK VRQPAGQKSE APSSSAAVTK RQSKSQRSIN
701: NNSPSANIVA SPTSQAVK

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.