Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G452200.1 | Wheat | nucleus | 96.1 | 96.66 |
| TraesCS3A01G417300.1 | Wheat | nucleus | 95.52 | 95.52 |
| HORVU3Hr1G092690.2 | Barley | nucleus | 92.05 | 93.4 |
| Os01t0911700-02 | Rice | nucleus | 67.49 | 64.24 |
| Zm00001d042396_P003 | Maize | nucleus | 61.56 | 61.65 |
| EES04085 | Sorghum | nucleus | 61.99 | 61.2 |
| OQU89229 | Sorghum | nucleus | 23.7 | 40.8 |
| PGSC0003DMT400051746 | Potato | nucleus | 29.34 | 35.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.1 | 34.81 |
| PGSC0003DMT400051934 | Potato | nucleus | 30.64 | 34.19 |
| Solyc06g083600.1.1 | Tomato | nucleus | 30.49 | 34.03 |
| Solyc06g083590.2.1 | Tomato | nucleus | 28.32 | 33.85 |
| VIT_07s0005g05400.t01 | Wine grape | nucleus | 35.26 | 33.29 |
| GSMUA_Achr7P23040_001 | Banana | nucleus | 34.39 | 32.47 |
| CDY15121 | Canola | nucleus | 30.78 | 31.7 |
| KRH46807 | Soybean | nucleus | 34.25 | 31.14 |
| KRG99861 | Soybean | nucleus | 33.81 | 30.87 |
| AT3G24650.1 | Thale cress | nucleus | 31.79 | 30.56 |
| Bra013248.1-P | Field mustard | nucleus | 31.07 | 29.99 |
| CDX93029 | Canola | nucleus | 31.07 | 29.94 |
| TraesCS3D01G249100.1 | Wheat | plastid | 9.97 | 22.92 |
| TraesCS7D01G326300.2 | Wheat | nucleus | 11.13 | 22.51 |
| TraesCS2D01G560000.1 | Wheat | nucleus | 11.85 | 17.94 |
| TraesCS2D01G105300.1 | Wheat | nucleus | 11.27 | 8.56 |
| TraesCS2D01G211600.2 | Wheat | plastid | 9.97 | 7.16 |
Protein Annotations
| MapMan:15.5.5.5 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0000003 | GO:GO:0001076 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009657 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009737 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031930 | GO:GO:0045893 | InterPro:IPR003340 |
| InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF1 | SMART:SM01019 |
| SUPFAM:SSF101936 | EnsemblPlantsGene:TraesCS3D01G412800 | EnsemblPlants:TraesCS3D01G412800.1 | TIGR:cd10015 | SEG:seg | : |
Description
No Description!
Coordinates
chr3D:-:525469629..525473974
Molecular Weight (calculated)
73127.4 Da
IEP (calculated)
8.457
GRAVY (calculated)
-0.625
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MDASAGSSPP RHSQGDAPRR GGPRRGKGPA VEIRQGEDDF MFAQDTFPVL PDFPCLSSPS SSTFSSSSSS NSSSAFAAPA GAGGRGGEGA RGEPSEPAAA
101: GDGMDDLSDI DHLLDFASIN DDVPWDDEPL FPDVGMMLED VISEQQNQQP PAGHGAGGRM ASHAAAGGGD DAFMGGGGGG SAADDLPLFF MEWLKNNRDC
201: ISAEDLRSIR LRRSTIEAAA ARLGGGRQGT MQLLKLILTW VQNHHLQKKR PRVGAMDQEA PPAGGQLPSP GANPGYEFPA ETGAAANTSW MPYQAFSPTG
301: SYGGEAIYPF QQGCSTSSVA VSSQPFSPPA APDMHAGAWP LQYAAFVPAG ATSAGTQTYP MPPPGAVPQP FAAPGFAGQF PQRMEPAATR EARKKRMARQ
401: RRLSCLQQQR SQQLNLSQIQ SGGFPQEPSP RAAHSAPVTP PSSGWGGLWS QHAVQGQPHG QLMVQVPNPL STKSNSSRQK QQKPSPDAAA RPPSGGAATQ
501: QRPGQAAASD KQRQQGARTP AAAPAAGDKN LRFLLQKVLK QSDVGTLGRI VLPKKEAETH LPELKTGDGI SIPIEDIGTS QVWSMRYRFW PNNKSRMYLL
601: ENTGDFVRSN ELQEGDFIVL YSDVKSGKYL IRGVKVRAQQ DLAKHKNGSP EKGGASDAKA GAEDGGCKEK SPHGVRRSRQ EAASMNQMAV SI
101: GDGMDDLSDI DHLLDFASIN DDVPWDDEPL FPDVGMMLED VISEQQNQQP PAGHGAGGRM ASHAAAGGGD DAFMGGGGGG SAADDLPLFF MEWLKNNRDC
201: ISAEDLRSIR LRRSTIEAAA ARLGGGRQGT MQLLKLILTW VQNHHLQKKR PRVGAMDQEA PPAGGQLPSP GANPGYEFPA ETGAAANTSW MPYQAFSPTG
301: SYGGEAIYPF QQGCSTSSVA VSSQPFSPPA APDMHAGAWP LQYAAFVPAG ATSAGTQTYP MPPPGAVPQP FAAPGFAGQF PQRMEPAATR EARKKRMARQ
401: RRLSCLQQQR SQQLNLSQIQ SGGFPQEPSP RAAHSAPVTP PSSGWGGLWS QHAVQGQPHG QLMVQVPNPL STKSNSSRQK QQKPSPDAAA RPPSGGAATQ
501: QRPGQAAASD KQRQQGARTP AAAPAAGDKN LRFLLQKVLK QSDVGTLGRI VLPKKEAETH LPELKTGDGI SIPIEDIGTS QVWSMRYRFW PNNKSRMYLL
601: ENTGDFVRSN ELQEGDFIVL YSDVKSGKYL IRGVKVRAQQ DLAKHKNGSP EKGGASDAKA GAEDGGCKEK SPHGVRRSRQ EAASMNQMAV SI
001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
Arabidopsis Description
ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.