Factsheet for TraesCS2D01G560000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G589800.2	Wheat	nucleus	94.97	95.81
TraesCS2A01G554300.1	Wheat	nucleus	89.06	86.6
HORVU2Hr1G119600.1	Barley	nucleus	57.77	60.97
Os04t0676650-00	Rice	nucleus	37.86	39.5
Os04t0676600-01	Rice	nucleus	34.79	36.72
GSMUA_Achr3P00120_001	Banana	nucleus	14.44	36.46
TraesCS7D01G326300.2	Wheat	nucleus	26.48	35.38
Zm00001d001838_P001	Maize	nucleus	32.39	33.71
KXG27429	Sorghum	nucleus	31.95	32.37
VIT_10s0071g00270.t01	Wine grape	nucleus	19.04	28.52
TraesCS3D01G249100.1	Wheat	plastid	15.32	23.26
TraesCS3D01G412800.1	Wheat	nucleus	17.94	11.85
TraesCS2D01G105300.1	Wheat	nucleus	14.0	7.03
TraesCS2D01G211600.2	Wheat	plastid	13.57	6.43

Protein Annotations

EnsemblPlants:TraesCS2D01G560000.1	EnsemblPlantsGene:TraesCS2D01G560000	Gene3D:2.40.330.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	InterPro:IPR003340	InterPro:IPR015300	PANTHER:PTHR31140
PANTHER:PTHR31140:SF12	PFAM:PF02362	SEG:seg	SMART:SM01019	SUPFAM:SSF101936	TIGR:cd10017
MapMan:15.5.5.5	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:632978558..632982511

Molecular Weight (calculated)

50496.4 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.667

Length

457 amino acids

Sequence
(BLAST)

001: MADANGSPSP SPQHSSGGEA VTGDFVAVPG AGPHASFQAL LASVGGHDPH GAVANVLAQR QYQEYEQLFG PPGPLIQAPP QPMPLQVQAP SPTPPPPHCA
101: QSNLLMPAGT HNYQHWQPPA PQIGVAAAPR QAPMGLGAGV FGDWTMYNVN STVVSVACGS SSSVRGNNNN GYHQSSRLCS PTAWPNNFMP PLTSPYSVYP
201: HGIQQQQGHQ QAITYNANNN NHQQGNSGFV SNFTVDPPLL PAQCFQPISP ASNNRSSPQY LDEARYAKRA KRRTQKRKNS EDPPEMGSEN AMMLDENHNF
301: SNQAQQFFTT RFNCKDYHMI VWKELTNSDV GNIGRIVVPK RDAEANLPAL LERDGLILKM EDMRLPVTWN FKFRYWPNNK SRMYVLESTG EFSKNHNLET
401: QDTFIIYKSL ESGKFLVRGE KVTGQCPTLI CPECKEQGRI YNKQCGFTRN LHAKKRR

Best Arabidopsis Sequence Match ( AT3G24650.1 )
(BLAST)

001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK

Arabidopsis Description

ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.