Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0676600-01 | Rice | nucleus | 76.03 | 76.91 |
| Zm00001d001838_P001 | Maize | nucleus | 39.27 | 39.18 |
| GSMUA_Achr3P00120_001 | Banana | nucleus | 15.98 | 38.67 |
| KXG27429 | Sorghum | nucleus | 39.5 | 38.36 |
| TraesCS2B01G589800.2 | Wheat | nucleus | 39.27 | 37.97 |
| TraesCS2D01G560000.1 | Wheat | nucleus | 39.5 | 37.86 |
| TraesCS2A01G554300.1 | Wheat | nucleus | 38.58 | 35.96 |
| Os08t0101000-01 | Rice | nucleus | 29.0 | 35.08 |
| HORVU2Hr1G119600.1 | Barley | nucleus | 33.79 | 34.18 |
| VIT_10s0071g00270.t01 | Wine grape | nucleus | 21.69 | 31.15 |
| Os01t0713600-01 | Rice | plastid | 17.12 | 25.95 |
| Os01t0911700-02 | Rice | nucleus | 21.46 | 12.93 |
| Os07t0679700-01 | Rice | nucleus | 15.07 | 6.95 |
| Os07t0563300-01 | Rice | nucleus | 15.07 | 6.91 |
Protein Annotations
| EntrezGene:107276135 | MapMan:15.5.5.5 | Gene3D:2.40.330.10 | InterPro:B3_DNA-bd | ProteinID:BAS91626.1 | ProteinID:CAE05756.1 |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 |
| EnsemblPlantsGene:Os04g0676650 | EnsemblPlants:Os04t0676650-00 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31140 | PANTHER:PTHR31140:SF1 |
| UniProt:Q7XKC4 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI0001A51C29 | RefSeq:XP_015635176.1 | RefSeq:XP_015635177.1 |
| SEG:seg | : | : | : | : | : |
Description
LATE-FLOWERING 2Putative B3 domain-containing protein Os04g0676650. (Os04t0676650-00)
Coordinates
chr4:-:34548346..34553030
Molecular Weight (calculated)
48648.9 Da
IEP (calculated)
8.267
GRAVY (calculated)
-0.662
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MADARGSSSS SGDGGGGEGK GGAGHGDFVG GGQHNWYHGI LGAVPPPNVG RQNIVHHQYP AASLIQQHHQ SPTMPLPMAQ LPYVPQYTVL PTPAVLPSHH
101: HHHGQSQISQ ENFQDWVPSN NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNVFYQNL TFNSWTSNNM PRNPVYTSFH PAAIEDHHAP LFHSNNHDID
201: PGFQTNFRMD QAFVPASSPF PPVSSSSHSF SSAKISNGPT YTKKAKKSNV KDPPIVFRRS DMESEKNDDN PDQTPVSEPP SMNQNGENLI IRFNCREYRV
301: ILRKELTNSD VGNIGRIVMP KRDAEAHLPA LHQREGVTLK MDDFKFETTW NFKYRFWPNN KSRMYVLEST GGFVKHHGLQ TGDIFIIYKS SESGKFVVRG
401: EKAIKPNAIM PVVDCSCKNE LNKSEECGFT ISLQTKKT
101: HHHGQSQISQ ENFQDWVPSN NVAAPHVPSA FQDWRQMCNG SAFMPFGQTA ANSNVFYQNL TFNSWTSNNM PRNPVYTSFH PAAIEDHHAP LFHSNNHDID
201: PGFQTNFRMD QAFVPASSPF PPVSSSSHSF SSAKISNGPT YTKKAKKSNV KDPPIVFRRS DMESEKNDDN PDQTPVSEPP SMNQNGENLI IRFNCREYRV
301: ILRKELTNSD VGNIGRIVMP KRDAEAHLPA LHQREGVTLK MDDFKFETTW NFKYRFWPNN KSRMYVLEST GGFVKHHGLQ TGDIFIIYKS SESGKFVVRG
401: EKAIKPNAIM PVVDCSCKNE LNKSEECGFT ISLQTKKT
001: MKSLHVAANA GDLAEDCGIL GGDADDTVLM DGIDEVGREI WLDDHGGDNN HVHGHQDDDL IVHHDPSIFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
101: SASSSSAASS STSSAASWAI LRSDGEDPTP NQNQYASGNC DDSSGALQST ASMEIPLDSS QGFGCGEGGG DCIDMMETFG YMDLLDSNEF FDTSAIFSQD
201: DDTQNPNLMD QTLERQEDQV VVPMMENNSG GDMQMMNSSL EQDDDLAAVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW
301: VQTNHLQRRR TTTTTTNLSY QQSFQQDPFQ NPNPNNNNLI PPSDQTCFSP STWVPPPPQQ QAFVSDPGFG YMPAPNYPPQ PEFLPLLESP PSWPPPPQSG
401: PMPHQQFPMP PTSQYNQFGD PTGFNGYNMN PYQYPYVPAG QMRDQRLLRL CSSATKEARK KRMARQRRFL SHHHRHNNNN NNNNNNQQNQ TQIGETCAAV
501: APQLNPVATT ATGGTWMYWP NVPAVPPQLP PVMETQLPTM DRAGSASAMP RQQVVPDRRQ GWKPEKNLRF LLQKVLKQSD VGNLGRIVLP KKEAETHLPE
601: LEARDGISLA MEDIGTSRVW NMRYRFWPNN KSRMYLLENT GDFVKTNGLQ EGDFIVIYSD VKCGKYLIRG VKVRQPSGQK PEAPPSSAAT KRQNKSQRNI
701: NNNSPSANVV VASPTSQTVK
Arabidopsis Description
ABI3B3 domain-containing transcription factor ABI3 [Source:UniProtKB/Swiss-Prot;Acc:Q01593]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.