Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G417300.1 | |
| TraesCS3B01G452200.1 | |
| TraesCS3D01G412800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22320.1 | TraesCS3A01G417300.1 | AT3G24650.1 | 10743655 |
| AT3G22320.1 | TraesCS3B01G452200.1 | AT3G24650.1 | 10743655 |
| AT3G22320.1 | TraesCS3D01G412800.1 | AT3G24650.1 | 10743655 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G346300.1 | Wheat | nucleus | 96.1 | 96.1 |
| TraesCS2B01G364700.1 | Wheat | nucleus, plastid | 94.15 | 94.15 |
| TraesCS2D01G344900.1 | Wheat | nucleus | 88.29 | 86.6 |
| Os04t0487300-01 | Rice | nucleus | 55.61 | 68.26 |
| Zm00001d003242_P001 | Maize | mitochondrion | 68.29 | 67.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 67.32 | 66.67 |
| KXG26596 | Sorghum | nucleus | 66.34 | 66.02 |
| VIT_11s0016g03530.t01 | Wine grape | nucleus | 64.88 | 64.56 |
| HORVU2Hr1G084300.6 | Barley | nucleus, plastid | 86.83 | 64.49 |
| KRH48354 | Soybean | nucleus | 63.9 | 63.59 |
| Solyc05g051790.2.1 | Tomato | nucleus | 58.05 | 63.3 |
| KRH39324 | Soybean | nucleus | 63.41 | 63.11 |
| PGSC0003DMT400051454 | Potato | nucleus | 63.41 | 63.11 |
| PGSC0003DMT400077392 | Potato | nucleus | 62.93 | 62.62 |
| Solyc03g025570.2.1 | Tomato | cytosol | 35.61 | 62.39 |
| TraesCS2D01G344800.1 | Wheat | mitochondrion, nucleus | 60.0 | 60.29 |
| CDY35542 | Canola | nucleus | 60.49 | 60.19 |
| Bra001864.1-P | Field mustard | nucleus | 60.49 | 60.19 |
| Bra031350.1-P | Field mustard | nucleus | 60.49 | 60.19 |
| CDX92939 | Canola | nucleus | 60.49 | 60.19 |
| CDY24303 | Canola | nucleus | 60.49 | 60.19 |
| CDY10635 | Canola | nucleus | 60.49 | 60.19 |
| AT3G22320.1 | Thale cress | nucleus | 60.0 | 60.0 |
| CDY37407 | Canola | nucleus | 60.0 | 59.71 |
| TraesCS3D01G326800.2 | Wheat | nucleus | 60.0 | 58.57 |
| Solyc05g053510.1.1 | Tomato | nucleus | 54.15 | 53.62 |
| PGSC0003DMT400069997 | Potato | nucleus | 53.17 | 52.66 |
| Bra006521.1-P | Field mustard | nucleus | 47.8 | 49.25 |
| CDX88871 | Canola | nucleus | 48.29 | 46.7 |
| CDX70895 | Canola | nucleus | 47.32 | 46.63 |
| AT5G57980.1 | Thale cress | nucleus | 45.85 | 44.76 |
| CDY11839 | Canola | nucleus | 45.37 | 44.29 |
| Bra006791.1-P | Field mustard | nucleus | 44.88 | 43.81 |
| CDX88650 | Canola | nucleus | 44.88 | 43.81 |
| AT3G16680.1 | Thale cress | golgi | 18.54 | 43.68 |
| TraesCS5D01G140300.1 | Wheat | nucleus | 34.15 | 30.97 |
| TraesCS4D01G128200.1 | Wheat | nucleus | 35.61 | 28.97 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR035913 | InterPro:IPR036710 | HAMAP:MF_00025 |
| PFAM:PD005155 | PFAM:PF01191 | PFAM:PF03871 | PIRSF:PIRSF000747 | PANTHER:PTHR10535 | InterPro:RNA_pol_Rpb5_N |
| InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | InterPro:RpoH/RPB5 | SUPFAM:SSF53036 | SUPFAM:SSF55287 |
| EnsemblPlantsGene:TraesCS2D01G345000 | EnsemblPlants:TraesCS2D01G345000.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:440966667..440968851
Molecular Weight (calculated)
23663.7 Da
IEP (calculated)
9.850
GRAVY (calculated)
-0.487
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAEGETSR LFRVRRTVMQ MLRDRGYLVL DADVDLTMGE FVGRYGDPVR REDLVINRAK KDNPDDQIYV FFPNEPKPGT KVVTSYAEKM AQENVPNGIL
101: VVQQALTAFA RNKLVETSKF RLQVFQEGEL LINIKNHDLV PEHVLLTQEQ KKTLLEKYTV KETQLPRIQH SDPIARYYGM RRGQVVKITR PSETAGKYVT
201: YRYVV
101: VVQQALTAFA RNKLVETSKF RLQVFQEGEL LINIKNHDLV PEHVLLTQEQ KKTLLEKYTV KETQLPRIQH SDPIARYYGM RRGQVVKITR PSETAGKYVT
201: YRYVV
001: MSDMDDEITR IFKVRRTVLQ MLRDRGYTIE ESDLNLKREE FVQRFCKTMN KVNKEALFVS ANKGPNPADK IYVFYPEGPK VGVPVIKKEV AIKMRDDKVH
101: RGIVVVPMAI TAPARMAVSE LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA RYYGLKRGQV VKIRRSDATS
201: LDYYTYRFAV
101: RGIVVVPMAI TAPARMAVSE LNKMLTIEVF EEAELVTNIT EHKLVNKYYV LDDQAKKKLL NTYTVQDTQL PRILVTDPLA RYYGLKRGQV VKIRRSDATS
201: LDYYTYRFAV
Arabidopsis Description
NRPB5L1DNA-directed RNA polymerase subunit 5-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.