Factsheet for Bra001864.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013248.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22320.1	Bra013248.1-P	AT3G24650.1	10743655

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92939	Canola	nucleus	100.0	100.0
CDY24303	Canola	nucleus	100.0	100.0
CDY35542	Canola	nucleus	100.0	100.0
Bra031350.1-P	Field mustard	nucleus	95.15	95.15
AT3G22320.1	Thale cress	nucleus	93.69	94.15
VIT_11s0016g03530.t01	Wine grape	nucleus	84.47	84.47
Solyc03g025570.2.1	Tomato	cytosol	46.6	82.05
Solyc05g051790.2.1	Tomato	nucleus	74.27	81.38
KRH48354	Soybean	nucleus	80.1	80.1
KRH39324	Soybean	nucleus	80.1	80.1
PGSC0003DMT400051454	Potato	nucleus	79.61	79.61
PGSC0003DMT400077392	Potato	nucleus	78.64	78.64
GSMUA_AchrUn_...	Banana	nucleus	73.3	72.95
GSMUA_Achr2P00920_001	Banana	nucleus	67.96	68.63
Zm00001d012557_P001	Maize	extracellular	67.48	66.19
Os01t0805800-01	Rice	nucleus	66.99	65.71
KXG33574	Sorghum	nucleus	66.02	64.76
Solyc05g053510.1.1	Tomato	nucleus	64.56	64.25
TraesCS3A01G333200.2	Wheat	nucleus	65.05	63.81
HORVU3Hr1G078930.1	Barley	nucleus	65.05	63.81
TraesCS3B01G363400.1	Wheat	nucleus	65.05	63.81
TraesCS3D01G326800.2	Wheat	nucleus	65.05	63.81
PGSC0003DMT400069997	Potato	nucleus	63.11	62.8
Zm00001d003242_P001	Maize	mitochondrion	62.62	62.62
KXG26596	Sorghum	nucleus	61.16	61.16
TraesCS2D01G345000.2	Wheat	nucleus	60.19	60.49
TraesCS2A01G346300.1	Wheat	nucleus	60.19	60.49
TraesCS2D01G344900.1	Wheat	nucleus	60.68	59.81
TraesCS2B01G364600.1	Wheat	nucleus, plastid	60.68	59.81
TraesCS2A01G346200.1	Wheat	nucleus	60.19	59.33
TraesCS2B01G364700.1	Wheat	nucleus, plastid	58.74	59.02
Os04t0487300-01	Rice	nucleus	45.63	56.29
Bra006521.1-P	Field mustard	nucleus	54.37	56.28
TraesCS2D01G344800.1	Wheat	mitochondrion, nucleus	52.43	52.94
TraesCS2A01G346100.2	Wheat	nucleus	52.43	52.94
TraesCS2B01G364500.1	Wheat	nucleus	51.94	52.45
HORVU2Hr1G084270.1	Barley	nucleus	51.94	52.45
HORVU1Hr1G048500.1	Barley	endoplasmic reticulum	12.14	51.02
HORVU6Hr1G071230.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.27	50.0
HORVU1Hr1G052270.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.24	46.43
HORVU7Hr1G020400.1	Barley	cytosol, mitochondrion, nucleus, plastid	25.24	46.43
HORVU4Hr1G028860.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.76	45.54
HORVU2Hr1G026650.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	24.27	44.64
Bra006791.1-P	Field mustard	nucleus	44.66	43.81
HORVU2Hr1G084300.6	Barley	nucleus, plastid	58.25	43.48
HORVU6Hr1G011700.1	Barley	endoplasmic reticulum, nucleus	33.5	37.91
Bra007300.1-P	Field mustard	nucleus	35.92	32.03
Bra016940.1-P	Field mustard	nucleus	32.04	29.6
Bra014812.1-P	Field mustard	nucleus	32.04	28.09

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EnsemblPlantsGene:Bra001864	EnsemblPlants:Bra001864.1	EnsemblPlants:Bra001864.1-P
InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
InterPro:IPR035913	InterPro:IPR036710	UniProt:M4CCD4	HAMAP:MF_00025	PFAM:PD005155	PFAM:PF01191
PFAM:PF03871	PIRSF:PIRSF000747	ScanProsite:PS01110	PANTHER:PTHR10535	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RNA_pol_subH/Rpb5_CS	InterPro:RPB5-like	InterPro:RpoH/RPB5	SUPFAM:SSF53036	SUPFAM:SSF55287
UniParc:UPI00025406C2	:	:	:	:	:

Description

AT3G22320 (E=7e-108) ATRPABC24.3, RPB5A, NRPB5, NRPD5 | NRPB5; DNA binding / DNA-directed RNA polymerase

Coordinates

chrA03:-:19044679..19045698

Molecular Weight (calculated)

24230.6 Da

IEP (calculated)

9.879

GRAVY (calculated)

-0.402

Length

206 amino acids

Sequence
(BLAST)

001: MGLTEEEIKR LYRIQKTLMQ MLKDRGYFIA DSEITMSLSQ FVRKYGDNMK REDLVTLKAK RNDSSDQLYI FFPDEAKVGV KTMKVYTNRM KSENVYRAIL
101: VVQQNLTPFA RTCISEISSK FHLEVFQEAE MLVNIKEHVL VPEHQVLTTE EKKTLLERYT VKETQLPRIQ VTDPIARYFG LKRGQVVKII RPSETAGRYV
201: TYRYVV

Best Arabidopsis Sequence Match ( AT3G22320.1 )
(BLAST)

001: MLTEEELKRL YRIQKTLMQM LRDRGYFIAD SELTMTKQQF IRKHGDNMKR EDLVTLKAKR NDNSDQLYIF FPDEAKVGVK TMKMYTNRMK SENVFRAILV
101: VQQNLTPFAR TCISEISSKF HLEVFQEAEM LVNIKEHVLV PEHQVLTTEE KKTLLERYTV KETQLPRIQV TDPIARYFGL KRGQVVKIIR PSETAGRYVT
201: YRYVV

Arabidopsis Description

NRPB5ADNA-directed RNA polymerases II and IV subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:O81098]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.