Factsheet for Bra016940.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06931	Canola	nucleus	99.1	99.1
AT2G41340.1	Thale cress	nucleus	70.85	72.48
Bra007300.1-P	Field mustard	nucleus	60.99	58.87
VIT_08s0007g05540.t01	Wine grape	nucleus	60.09	58.52
PGSC0003DMT400057891	Potato	nucleus	24.66	55.56
KRG95122	Soybean	nucleus	50.67	55.12
Solyc04g040170.2.1	Tomato	nucleus	55.16	54.19
PGSC0003DMT400027609	Potato	cytosol	54.71	53.74
KRH66799	Soybean	nucleus	56.5	53.39
GSMUA_Achr9P19340_001	Banana	nucleus	23.77	53.0
Solyc01g098320.2.1	Tomato	nucleus	51.12	50.22
Os12t0139500-01	Rice	nucleus	45.29	44.49
TraesCS5A01G131700.1	Wheat	nucleus	43.05	42.48
Bra014812.1-P	Field mustard	nucleus	43.5	41.28
TraesCS5B01G132800.1	Wheat	nucleus	41.7	41.15
HORVU5Hr1G043080.6	Barley	nucleus	41.26	40.35
TraesCS5D01G140300.1	Wheat	nucleus	40.36	39.82
TraesCS4B01G133200.1	Wheat	nucleus	44.84	39.68
TraesCS4D01G128200.1	Wheat	nucleus	44.39	39.29
TraesCS4A01G185400.1	Wheat	nucleus	44.39	39.29
KXG22818	Sorghum	mitochondrion	18.83	38.18
EES09238	Sorghum	nucleus	44.39	37.64
HORVU0Hr1G038750.1	Barley	nucleus	43.5	35.93
Bra006521.1-P	Field mustard	nucleus	29.6	33.17
Bra031350.1-P	Field mustard	nucleus	30.49	33.01
Bra001864.1-P	Field mustard	nucleus	29.6	32.04
Bra006791.1-P	Field mustard	nucleus	28.7	30.48
Os11t0143400-00	Rice	nucleus	44.84	29.76

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EnsemblPlantsGene:Bra016940	EnsemblPlants:Bra016940.1	EnsemblPlants:Bra016940.1-P
InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0000418	GO:GO:0000419	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	UniProt:M4DKB1
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2
InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287
UniParc:UPI00025452FB	:	:	:	:	:

Description

AT2G41340 (E=4e-090) RPB5D | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D); DNA binding / DNA-directed RNA polymerase

Coordinates

chrA04:+:17492735..17494058

Molecular Weight (calculated)

25262.4 Da

IEP (calculated)

7.593

GRAVY (calculated)

-0.358

Length

223 amino acids

Sequence
(BLAST)

001: MEGKGKELAV GSGLSKSLDE SRVDSHSYYL ARRTTMEMLR DRGYDISNED INLTLQEFRS LYGDPPNVDR LRISAQHCSD SSKKIAVVFC GSGIVKVNAI
101: REIAADVLGR ENLTGLILVL QSDITNQALK AVELFSFKVE LFHLTELLVN ITKHVLRPKH RVLNDQEKES LFKKFSIEEQ QLPKLLKKDP SAKYYGLEKG
201: QVVEVTYKGE GSESDHVLYR CVW

Best Arabidopsis Sequence Match ( AT2G41340.1 )
(BLAST)

001: MEGKGKEIVV GHSISKSSVE CHKYYLARRT TMEMLRDRGY DVSDEDINLS LQQFRALYGE HPDVDLLRIS AKHRFDSSKK ISVVFCGTGI VKVNAMRVIA
101: ADVLSRENIT GLILVLQSHI TNQALKAVEL FSFKVELFEI TDLLVNVSKH VLRPKHQVLN DKEKESLLKK FSIEEKQLPR LSSKDPIVRY YGLETGQVMK
201: VTYKDELSES HVTYRCVS

Arabidopsis Description

NRPD5BDNA-directed RNA polymerases IV and V subunit 5B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.