Factsheet for PGSC0003DMT400027609

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g040170.2.1	Tomato	nucleus	99.12	99.12
PGSC0003DMT400057891	Potato	nucleus	35.24	80.81
VIT_08s0007g05540.t01	Wine grape	nucleus	66.08	65.5
GSMUA_Achr9P19340_001	Banana	nucleus	28.63	65.0
KRG95122	Soybean	nucleus	55.51	61.46
KRH66799	Soybean	nucleus	61.23	58.9
AT3G57080.1	Thale cress	nucleus	56.39	57.66
Bra007300.1-P	Field mustard	nucleus	57.27	56.28
CDY06137	Canola	nucleus	57.27	56.28
CDX72073	Canola	nucleus	56.83	56.09
Bra016940.1-P	Field mustard	nucleus	53.74	54.71
AT2G41340.1	Thale cress	nucleus	52.42	54.59
CDY06931	Canola	nucleus	53.3	54.26
CDY14763	Canola	nucleus	52.42	53.36
Os12t0139500-01	Rice	nucleus	51.1	51.1
TraesCS5A01G131700.1	Wheat	nucleus	48.46	48.67
TraesCS5B01G132800.1	Wheat	nucleus	47.58	47.79
HORVU5Hr1G043080.6	Barley	nucleus	47.58	47.37
TraesCS5D01G140300.1	Wheat	nucleus	46.26	46.46
KXG22818	Sorghum	mitochondrion	22.47	46.36
TraesCS4A01G185400.1	Wheat	nucleus	48.46	43.65
TraesCS4B01G133200.1	Wheat	nucleus	48.46	43.65
TraesCS4D01G128200.1	Wheat	nucleus	48.46	43.65
EES09238	Sorghum	nucleus	48.9	42.21
HORVU0Hr1G038750.1	Barley	nucleus	47.58	40.0
PGSC0003DMT400051454	Potato	nucleus	33.04	36.41
PGSC0003DMT400077392	Potato	nucleus	32.6	35.92
Os11t0143400-00	Rice	nucleus	50.66	34.23
PGSC0003DMT400069997	Potato	nucleus	30.4	33.33

Protein Annotations

EntrezGene:102596627	MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710
UniProt:M1APX5	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	EnsemblPlantsGene:PGSC0003DMG400010646	PGSC:PGSC0003DMG400010646
EnsemblPlants:PGSC0003DMT400027609	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf
InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0002969120	RefSeq:XP_006364435.1
SEG:seg	:	:	:	:	:

Description

DNA-directed RNA polymerase II [Source:PGSC_GENE;Acc:PGSC0003DMG400010646]

Coordinates

chr4:-:12352017..12358450

Molecular Weight (calculated)

26153.9 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.236

Length

227 amino acids

Sequence
(BLAST)

001: MDLNGLAMDV DGDNLGTCLA SFVDDGTVES HRYFLARRTI LEMLKDRGFA IPNSEIDTTL QEFREKYGQT PDVERLRVSA MHRNDLTNKV LVIFCGPNAV
101: KVNVIRSILT QIMNKESLSR LILVIQNQMT NPAMKAVELF SFKVEIFQIT DLLVNITKHV LKPRHELLTD TEKEKLLKKY NLEEKQLPRM SQKDAIARYY
201: GLEKGQVVKV TYSSEIIETH VTYRCVW

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.