Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G131700.1 | Wheat | nucleus | 98.67 | 98.67 |
| TraesCS5D01G140300.1 | Wheat | nucleus | 97.35 | 97.35 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 92.48 | 91.67 |
| TraesCS4B01G133200.1 | Wheat | nucleus | 74.78 | 67.06 |
| Os12t0139500-01 | Rice | nucleus | 66.81 | 66.52 |
| GSMUA_Achr9P19340_001 | Banana | nucleus | 26.99 | 61.0 |
| PGSC0003DMT400057891 | Potato | nucleus | 24.78 | 56.57 |
| KXG22818 | Sorghum | mitochondrion | 27.43 | 56.36 |
| Solyc04g040170.2.1 | Tomato | nucleus | 47.79 | 47.58 |
| PGSC0003DMT400027609 | Potato | cytosol | 47.79 | 47.58 |
| Solyc01g098320.2.1 | Tomato | nucleus | 47.35 | 47.14 |
| VIT_08s0007g05540.t01 | Wine grape | nucleus | 47.35 | 46.72 |
| KRG95122 | Soybean | nucleus | 41.15 | 45.37 |
| Os11t0143400-00 | Rice | nucleus | 66.37 | 44.64 |
| VIT_13s0139g00310.t01 | Wine grape | nucleus | 43.36 | 44.34 |
| KRH66799 | Soybean | nucleus | 46.02 | 44.07 |
| CDY14763 | Canola | nucleus | 42.48 | 43.05 |
| AT3G57080.1 | Thale cress | nucleus | 41.59 | 42.34 |
| AT2G41340.1 | Thale cress | nucleus | 40.71 | 42.2 |
| Bra016940.1-P | Field mustard | nucleus | 41.15 | 41.7 |
| CDX72073 | Canola | nucleus | 42.04 | 41.3 |
| CDY06931 | Canola | nucleus | 40.71 | 41.26 |
| CDY06137 | Canola | nucleus | 42.04 | 41.13 |
| Bra007300.1-P | Field mustard | nucleus | 42.04 | 41.13 |
| KRH62911 | Soybean | nucleus | 32.74 | 40.44 |
| AT3G54490.1 | Thale cress | nucleus | 41.59 | 40.34 |
| Bra014812.1-P | Field mustard | nucleus | 41.59 | 40.0 |
| CDY13211 | Canola | nucleus | 42.04 | 38.62 |
| CDX76143 | Canola | cytosol | 42.04 | 37.85 |
| KRH30040 | Soybean | nucleus | 39.38 | 37.71 |
| TraesCS2B01G364500.1 | Wheat | nucleus | 33.63 | 37.25 |
| TraesCS3B01G363400.1 | Wheat | nucleus | 33.63 | 36.19 |
| TraesCS2B01G364700.1 | Wheat | nucleus, plastid | 31.86 | 35.12 |
| TraesCS2B01G364600.1 | Wheat | nucleus, plastid | 30.97 | 33.49 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR035913 | InterPro:IPR036710 | PFAM:PD005155 |
| PFAM:PF01191 | PFAM:PF03871 | PIRSF:PIRSF000747 | PANTHER:PTHR10535 | PANTHER:PTHR10535:SF2 | InterPro:RNA_pol_Rpb5_N |
| InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | SUPFAM:SSF53036 | SUPFAM:SSF55287 | EnsemblPlantsGene:TraesCS5B01G132800 |
| EnsemblPlants:TraesCS5B01G132800.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:247654073..247665096
Molecular Weight (calculated)
26017.5 Da
IEP (calculated)
8.210
GRAVY (calculated)
-0.355
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSFDDVPE VVGWMSSMVD RGGRASQESH RLFLARRTAL EMLRDRGYSV PESELARTLP EFRAWWAPEP EIERLTFSTF LASDHSDKVK ILFCGPEPVR
101: IATIQKIYDQ IEGENLSRLI LILQGKIMPR AKESVKEKFT FKVDIFQVNE LLVNISKHAL KPKHEVLTAE EKARLLKKYN VQDSQLPRML ETDPVARYYG
201: LGKGTVLKVT YDSELTGNHV TYRCIF
101: IATIQKIYDQ IEGENLSRLI LILQGKIMPR AKESVKEKFT FKVDIFQVNE LLVNISKHAL KPKHEVLTAE EKARLLKKYN VQDSQLPRML ETDPVARYYG
201: LGKGTVLKVT YDSELTGNHV TYRCIF
001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
Arabidopsis Description
NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.