Factsheet for Solyc01g098320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057891	Potato	nucleus	37.44	85.86
Solyc04g040170.2.1	Tomato	nucleus	84.58	84.58
GSMUA_Achr9P19340_001	Banana	nucleus	27.75	63.0
VIT_08s0007g05540.t01	Wine grape	nucleus	61.23	60.7
KRG95122	Soybean	nucleus	53.74	59.51
KRH66799	Soybean	nucleus	59.91	57.63
AT3G57080.1	Thale cress	nucleus	52.42	53.6
CDY06137	Canola	nucleus	53.3	52.38
Bra007300.1-P	Field mustard	nucleus	53.3	52.38
CDX72073	Canola	nucleus	52.86	52.17
Bra016940.1-P	Field mustard	nucleus	50.22	51.12
CDY14763	Canola	nucleus	49.78	50.67
CDY06931	Canola	nucleus	49.78	50.67
AT2G41340.1	Thale cress	nucleus	48.46	50.46
Os12t0139500-01	Rice	nucleus	49.34	49.34
TraesCS5A01G131700.1	Wheat	nucleus	48.02	48.23
TraesCS5B01G132800.1	Wheat	nucleus	47.14	47.35
HORVU5Hr1G043080.6	Barley	nucleus	46.7	46.49
TraesCS5D01G140300.1	Wheat	nucleus	45.81	46.02
KXG22818	Sorghum	mitochondrion	22.03	45.45
TraesCS4D01G128200.1	Wheat	nucleus	47.14	42.46
TraesCS4A01G185400.1	Wheat	nucleus	47.14	42.46
TraesCS4B01G133200.1	Wheat	nucleus	47.14	42.46
EES09238	Sorghum	nucleus	47.14	40.68
Solyc03g025570.2.1	Tomato	cytosol	20.26	39.32
HORVU0Hr1G038750.1	Barley	nucleus	46.26	38.89
Solyc05g051790.2.1	Tomato	nucleus	29.52	35.64
Os11t0143400-00	Rice	nucleus	48.9	33.04
Solyc05g053510.1.1	Tomato	nucleus	29.96	32.85

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	InterPro:DNA_RNA_pol_RPB5_euk/virus	GO:GO:0000428	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710
UniProt:K4B0L9	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535
PANTHER:PTHR10535:SF2	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036
SUPFAM:SSF55287	EnsemblPlantsGene:Solyc01g098320.2	EnsemblPlants:Solyc01g098320.2.1	UniParc:UPI00027685D8	:	:

Description

No Description!

Coordinates

chr1:+:88880195..88884117

Molecular Weight (calculated)

26250.0 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.333

Length

227 amino acids

Sequence
(BLAST)

001: MDVNGSAMEV DVVNVSPCLT SFVDDGTVES HRYFLARKTM LEMLKDRGFA IPNSEIETTL QEFREKYGQR PDVERLRISA MHRTDLTNKV LVIFCGPNSV
101: KMNVIRNILS QIMNKESLSR LILIIENPMT NPAMKVVEDS PFKTEIFQIT DLLVNITKHV LKPKHELLTN AEKEQLLKKY NLEEKQLPRM SQKDAIARYY
201: GLEKGQVVKV TYNNEIIETH ATYRCVW

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.