Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06931 | Canola | nucleus | 95.07 | 95.07 |
| AT2G41340.1 | Thale cress | nucleus | 69.51 | 71.1 |
| CDY06137 | Canola | nucleus | 59.64 | 57.58 |
| CDX72073 | Canola | nucleus | 58.74 | 56.96 |
| VIT_08s0007g05540.t01 | Wine grape | nucleus | 58.3 | 56.77 |
| KRG95122 | Soybean | nucleus | 50.67 | 55.12 |
| PGSC0003DMT400057891 | Potato | nucleus | 24.22 | 54.55 |
| GSMUA_Achr9P19340_001 | Banana | nucleus | 23.77 | 53.0 |
| Solyc04g040170.2.1 | Tomato | nucleus | 53.81 | 52.86 |
| KRH66799 | Soybean | nucleus | 55.61 | 52.54 |
| PGSC0003DMT400027609 | Potato | cytosol | 53.36 | 52.42 |
| Solyc01g098320.2.1 | Tomato | nucleus | 50.67 | 49.78 |
| Os12t0139500-01 | Rice | nucleus | 44.84 | 44.05 |
| TraesCS5A01G131700.1 | Wheat | nucleus | 43.95 | 43.36 |
| TraesCS5B01G132800.1 | Wheat | nucleus | 43.05 | 42.48 |
| TraesCS5D01G140300.1 | Wheat | nucleus | 41.7 | 41.15 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 41.26 | 40.35 |
| TraesCS4B01G133200.1 | Wheat | nucleus | 45.29 | 40.08 |
| TraesCS4A01G185400.1 | Wheat | nucleus | 44.84 | 39.68 |
| TraesCS4D01G128200.1 | Wheat | nucleus | 44.84 | 39.68 |
| CDY13211 | Canola | nucleus | 43.05 | 39.02 |
| EES09238 | Sorghum | nucleus | 45.29 | 38.4 |
| KXG22818 | Sorghum | mitochondrion | 18.83 | 38.18 |
| CDX76143 | Canola | cytosol | 42.15 | 37.45 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 43.95 | 36.3 |
| CDY10635 | Canola | nucleus | 30.94 | 33.5 |
| CDY37407 | Canola | nucleus | 30.04 | 32.52 |
| CDY35542 | Canola | nucleus | 29.6 | 32.04 |
| CDY24303 | Canola | nucleus | 29.6 | 32.04 |
| CDX92939 | Canola | nucleus | 29.6 | 32.04 |
| CDX88871 | Canola | nucleus | 30.04 | 31.6 |
| CDX88650 | Canola | nucleus | 29.6 | 31.43 |
| CDY11839 | Canola | nucleus | 29.15 | 30.95 |
| CDX70895 | Canola | nucleus | 28.25 | 30.29 |
| Os11t0143400-00 | Rice | nucleus | 44.39 | 29.46 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | unigene:Bna.2208 | EnsemblPlants:CDY14763 | ProteinID:CDY14763 |
| ProteinID:CDY14763.1 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00084621001 | InterPro:IPR035913 | InterPro:IPR036710 | PFAM:PD005155 | PFAM:PF01191 |
| PFAM:PF03871 | PIRSF:PIRSF000747 | PANTHER:PTHR10535 | PANTHER:PTHR10535:SF2 | GO:Q9LKX4 | UniProt:Q9LKX4 |
| InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | SUPFAM:SSF53036 | SUPFAM:SSF55287 |
| UniParc:UPI000009EEC1 | : | : | : | : | : |
Description
BnaC04g47600DBnaC04g47600D protein [Source:UniProtKB/TrEMBL;Acc:Q9LKX4]
Coordinates
chrLK032047:+:225744..227160
Molecular Weight (calculated)
25209.2 Da
IEP (calculated)
8.074
GRAVY (calculated)
-0.374
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKGKELAV GSGLSKSLDE SRVDSHSYYL ARRTTMEMLR DRGYDISNED INLTLQEFRA LYGDRPNVDR LRISAQHCSD SSKKIAVVFC GSGIVKVSAI
101: RDIAADVLGR ENLTGLILVL QSDITNQALK AVELFSFKVE LFQLTELLVN ITKHVLRPKH HVLNEQEKES LFKKFSIQEQ QLPKLLKKDP TAKYYGLEKG
201: QVVEVTYKGE GSESDHVSYR CAW
101: RDIAADVLGR ENLTGLILVL QSDITNQALK AVELFSFKVE LFQLTELLVN ITKHVLRPKH HVLNEQEKES LFKKFSIQEQ QLPKLLKKDP TAKYYGLEKG
201: QVVEVTYKGE GSESDHVSYR CAW
001: MEGKGKEIVV GHSISKSSVE CHKYYLARRT TMEMLRDRGY DVSDEDINLS LQQFRALYGE HPDVDLLRIS AKHRFDSSKK ISVVFCGTGI VKVNAMRVIA
101: ADVLSRENIT GLILVLQSHI TNQALKAVEL FSFKVELFEI TDLLVNVSKH VLRPKHQVLN DKEKESLLKK FSIEEKQLPR LSSKDPIVRY YGLETGQVMK
201: VTYKDELSES HVTYRCVS
101: ADVLSRENIT GLILVLQSHI TNQALKAVEL FSFKVELFEI TDLLVNVSKH VLRPKHQVLN DKEKESLLKK FSIEEKQLPR LSSKDPIVRY YGLETGQVMK
201: VTYKDELSES HVTYRCVS
Arabidopsis Description
NRPD5BDNA-directed RNA polymerases IV and V subunit 5B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVB9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.