CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66799	Soybean	nucleus	92.68	80.51
PGSC0003DMT400057891	Potato	nucleus	30.24	62.63
VIT_08s0007g05540.t01	Wine grape	nucleus	68.29	61.14
Solyc04g040170.2.1	Tomato	nucleus	61.95	55.95
PGSC0003DMT400027609	Potato	cytosol	61.46	55.51
GSMUA_Achr9P19340_001	Banana	nucleus	26.83	55.0
Solyc01g098320.2.1	Tomato	nucleus	59.51	53.74
AT3G57080.1	Thale cress	nucleus	57.56	53.15
AT2G41340.1	Thale cress	nucleus	54.63	51.38
CDY14763	Canola	nucleus	55.12	50.67
Bra016940.1-P	Field mustard	nucleus	55.12	50.67
CDY06931	Canola	nucleus	55.12	50.67
CDY06137	Canola	nucleus	56.1	49.78
Bra007300.1-P	Field mustard	nucleus	56.1	49.78
CDX72073	Canola	nucleus	55.12	49.13
KRH62911	Soybean	nucleus	40.0	44.81
Os12t0139500-01	Rice	nucleus	49.27	44.49
KXG22818	Sorghum	mitochondrion	23.41	43.64
TraesCS5A01G131700.1	Wheat	nucleus	45.85	41.59
KRH30040	Soybean	nucleus	47.8	41.53
TraesCS5B01G132800.1	Wheat	nucleus	45.37	41.15
HORVU5Hr1G043080.6	Barley	nucleus	45.37	40.79
TraesCS5D01G140300.1	Wheat	nucleus	43.9	39.82
TraesCS4A01G185400.1	Wheat	nucleus	47.32	38.49
TraesCS4D01G128200.1	Wheat	nucleus	47.32	38.49
TraesCS4B01G133200.1	Wheat	nucleus	46.83	38.1
EES09238	Sorghum	nucleus	47.32	36.88
HORVU0Hr1G038750.1	Barley	nucleus	46.34	35.19
KRH48354	Soybean	nucleus	33.66	33.5
KRH39324	Soybean	nucleus	33.17	33.01
Os11t0143400-00	Rice	nucleus	48.78	29.76

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	UniProt:A0A0R0EV52	EMBL:ACUP02012082	InterPro:DNA_RNA_pol_RPB5_euk/virus
EnsemblPlantsGene:GLYMA_19G131700	GO:GO:0000428	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	EnsemblPlants:KRG95122	ProteinID:KRG95122	ProteinID:KRG95122.1
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2
InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287
UniParc:UPI0006EE0113	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:39220031..39224068

Molecular Weight (calculated)

23463.7 Da

IEP (calculated)

9.835

GRAVY (calculated)

-0.191

Length

205 amino acids

Sequence
(BLAST)

001: CLSKFVDDGI VESHRYYLSR TTTLEMLKNR GYSIPSHEID LSLSDFHDMH GQSPDPDRLR LSLTHATNSS KRILVIFCEP GVVKVTAIQN IAGQIINRDT
101: LTGLMLIVEN HITSQALKAV NLFSFKVEIF QITDLLVNIT KHVLKPKQQV LTDKQKKNLL KKYNIKEKQL PRMLLTDAIA RYYGLERGQV VKVTYSGEIT
201: QMHVW

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.