Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400027609 | Potato | cytosol | 99.12 | 99.12 |
| Solyc01g098320.2.1 | Tomato | nucleus | 84.58 | 84.58 |
| VIT_08s0007g05540.t01 | Wine grape | nucleus | 66.52 | 65.94 |
| GSMUA_Achr9P19340_001 | Banana | nucleus | 28.63 | 65.0 |
| KRG95122 | Soybean | nucleus | 55.95 | 61.95 |
| KRH66799 | Soybean | nucleus | 62.11 | 59.75 |
| AT3G57080.1 | Thale cress | nucleus | 56.83 | 58.11 |
| Bra007300.1-P | Field mustard | nucleus | 57.71 | 56.71 |
| CDY06137 | Canola | nucleus | 57.71 | 56.71 |
| CDX72073 | Canola | nucleus | 57.27 | 56.52 |
| Bra016940.1-P | Field mustard | nucleus | 54.19 | 55.16 |
| AT2G41340.1 | Thale cress | nucleus | 52.86 | 55.05 |
| CDY06931 | Canola | nucleus | 53.74 | 54.71 |
| CDY14763 | Canola | nucleus | 52.86 | 53.81 |
| Os12t0139500-01 | Rice | nucleus | 51.1 | 51.1 |
| TraesCS5A01G131700.1 | Wheat | nucleus | 48.46 | 48.67 |
| TraesCS5B01G132800.1 | Wheat | nucleus | 47.58 | 47.79 |
| HORVU5Hr1G043080.6 | Barley | nucleus | 47.14 | 46.93 |
| TraesCS5D01G140300.1 | Wheat | nucleus | 46.26 | 46.46 |
| KXG22818 | Sorghum | mitochondrion | 22.47 | 46.36 |
| TraesCS4A01G185400.1 | Wheat | nucleus | 48.46 | 43.65 |
| TraesCS4B01G133200.1 | Wheat | nucleus | 48.46 | 43.65 |
| TraesCS4D01G128200.1 | Wheat | nucleus | 48.46 | 43.65 |
| EES09238 | Sorghum | nucleus | 48.9 | 42.21 |
| Solyc03g025570.2.1 | Tomato | cytosol | 20.7 | 40.17 |
| HORVU0Hr1G038750.1 | Barley | nucleus | 47.58 | 40.0 |
| Solyc05g051790.2.1 | Tomato | nucleus | 30.4 | 36.7 |
| Os11t0143400-00 | Rice | nucleus | 50.66 | 34.23 |
| Solyc05g053510.1.1 | Tomato | nucleus | 30.84 | 33.82 |
Protein Annotations
| MapMan:15.1.6.3 | Gene3D:3.40.1340.10 | Gene3D:3.90.940.20 | InterPro:DNA_RNA_pol_RPB5_euk/virus | GO:GO:0000428 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR035913 | InterPro:IPR036710 |
| UniProt:K4BRF5 | PFAM:PD005155 | PFAM:PF01191 | PFAM:PF03871 | PIRSF:PIRSF000747 | PANTHER:PTHR10535 |
| PANTHER:PTHR10535:SF2 | InterPro:RNA_pol_Rpb5_N | InterPro:RNA_pol_Rpb5_N_sf | InterPro:RNA_pol_subH/Rpb5_C | InterPro:RPB5-like | SUPFAM:SSF53036 |
| SUPFAM:SSF55287 | EnsemblPlantsGene:Solyc04g040170.2 | EnsemblPlants:Solyc04g040170.2.1 | UniParc:UPI0002766207 | SEG:seg | : |
Description
No Description!
Coordinates
chr4:-:11959693..11968591
Molecular Weight (calculated)
26149.9 Da
IEP (calculated)
8.068
GRAVY (calculated)
-0.228
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLNGLAMDV DGENLGTCLA SFVDDGTVES HRYFLARRTI LEMLKDRGFA IPNSEIDTTL QEFREKYGQT PDVERLRVSA MHRNDLTNKV LVIFCGPNAV
101: KVNVIRSILT QIMNKESLSR LILVIQNQMT NPALKAVELF SFKVEIFQIT DLLVNITKHV LKPRHELLTD TEKEKLLKKY NLEEKQLPRM SQKDAIARYY
201: GLEKGQVVKV TYSSEIIETH VTYRCVW
101: KVNVIRSILT QIMNKESLSR LILVIQNQMT NPALKAVELF SFKVEIFQIT DLLVNITKHV LKPRHELLTD TEKEKLLKKY NLEEKQLPRM SQKDAIARYY
201: GLEKGQVVKV TYSSEIIETH VTYRCVW
001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW
Arabidopsis Description
NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.