CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95122	Soybean	nucleus	80.51	92.68
PGSC0003DMT400057891	Potato	nucleus	29.24	69.7
VIT_08s0007g05540.t01	Wine grape	nucleus	65.68	67.69
Solyc04g040170.2.1	Tomato	nucleus	59.75	62.11
PGSC0003DMT400027609	Potato	cytosol	58.9	61.23
GSMUA_Achr9P19340_001	Banana	nucleus	25.85	61.0
Solyc01g098320.2.1	Tomato	nucleus	57.63	59.91
AT3G57080.1	Thale cress	nucleus	55.51	59.01
AT2G41340.1	Thale cress	nucleus	53.81	58.26
Bra016940.1-P	Field mustard	nucleus	53.39	56.5
CDY06931	Canola	nucleus	53.39	56.5
CDY14763	Canola	nucleus	52.54	55.61
Bra007300.1-P	Field mustard	nucleus	54.24	55.41
CDY06137	Canola	nucleus	54.24	55.41
CDX72073	Canola	nucleus	53.39	54.78
Os12t0139500-01	Rice	nucleus	47.46	49.34
KRH62911	Soybean	nucleus	38.14	49.18
KXG22818	Sorghum	mitochondrion	22.46	48.18
KRH30040	Soybean	nucleus	47.03	47.03
TraesCS5A01G131700.1	Wheat	nucleus	44.49	46.46
TraesCS5B01G132800.1	Wheat	nucleus	44.07	46.02
HORVU5Hr1G043080.6	Barley	nucleus	44.07	45.61
TraesCS5D01G140300.1	Wheat	nucleus	42.8	44.69
TraesCS4A01G185400.1	Wheat	nucleus	47.03	44.05
TraesCS4D01G128200.1	Wheat	nucleus	47.03	44.05
TraesCS4B01G133200.1	Wheat	nucleus	46.61	43.65
EES09238	Sorghum	nucleus	46.19	41.44
HORVU0Hr1G038750.1	Barley	nucleus	45.34	39.63
KRH48354	Soybean	nucleus	30.93	35.44
KRH39324	Soybean	nucleus	30.51	34.95
Os11t0143400-00	Rice	nucleus	47.46	33.33

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EMBL:ACUP02002011	InterPro:DNA_RNA_pol_RPB5_euk/virus	EnsemblPlantsGene:GLYMA_03G129500
GO:GO:0000428	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
UniProt:I1JN69	InterPro:IPR035913	InterPro:IPR036710	EnsemblPlants:KRH66799	ProteinID:KRH66799	ProteinID:KRH66799.1
PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535	PANTHER:PTHR10535:SF2
InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like	SUPFAM:SSF53036	SUPFAM:SSF55287
UniParc:UPI0001CAA9C2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:34403653..34408535

Molecular Weight (calculated)

26913.7 Da

IEP (calculated)

9.051

GRAVY (calculated)

-0.210

Length

236 amino acids

Sequence
(BLAST)

001: MAATEIGLLE WVRVGGEEEE AEQAKGCLSK FVDNGSVESH RYYLSRRTTL EMLKDRGYSI PSHEIDLSLS DFRDMHGQFP DPDRLRLSLT HATNSSKRIL
101: VIFCGPGVVK VTAIRNIAGQ IINRDTLTGL ILIVENHITS QALKAVNLFS FKVEIFQITD LLVNITKHVL KPKHQVLTDK QKINLLKKYN IEEKQLPRML
201: QTDAIARYYG LERGQVVKVT YSGEVTQMHV TYRCVW

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.