Factsheet for Os12t0139500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G043080.6	Barley	nucleus	67.84	67.54
Os11t0143400-00	Rice	nucleus	99.56	67.26
TraesCS5A01G131700.1	Wheat	nucleus	66.96	67.26
GSMUA_Achr9P19340_001	Banana	nucleus	29.52	67.0
TraesCS5B01G132800.1	Wheat	nucleus	66.52	66.81
TraesCS5D01G140300.1	Wheat	nucleus	65.2	65.49
PGSC0003DMT400057891	Potato	nucleus	25.99	59.6
KXG22818	Sorghum	mitochondrion	26.43	54.55
Solyc04g040170.2.1	Tomato	nucleus	51.1	51.1
PGSC0003DMT400027609	Potato	cytosol	51.1	51.1
VIT_08s0007g05540.t01	Wine grape	nucleus	51.54	51.09
Solyc01g098320.2.1	Tomato	nucleus	49.34	49.34
KRG95122	Soybean	nucleus	44.49	49.27
VIT_13s0139g00310.t01	Wine grape	nucleus	46.7	47.96
KRH66799	Soybean	nucleus	49.34	47.46
CDY06931	Canola	nucleus	44.49	45.29
Bra016940.1-P	Field mustard	nucleus	44.49	45.29
AT3G57080.1	Thale cress	nucleus	44.05	45.05
CDY06137	Canola	nucleus	45.81	45.02
Bra007300.1-P	Field mustard	nucleus	45.81	45.02
CDY14763	Canola	nucleus	44.05	44.84
CDX72073	Canola	nucleus	45.37	44.78
AT2G41340.1	Thale cress	nucleus	42.29	44.04
Bra014812.1-P	Field mustard	nucleus	44.93	43.4
KRH62911	Soybean	nucleus	34.8	43.17
AT3G54490.1	Thale cress	nucleus	43.61	42.49
KRH30040	Soybean	nucleus	44.05	42.37
CDY13211	Canola	nucleus	45.37	41.87
CDX76143	Canola	cytosol	44.93	40.64
Os01t0805800-01	Rice	nucleus	34.36	37.14
Os04t0487300-01	Rice	nucleus	24.23	32.93

Protein Annotations

MapMan:15.1.6.3	Gene3D:3.40.1340.10	Gene3D:3.90.940.20	EntrezGene:4349748	ProteinID:BAF29138.1	ProteinID:BAT12638.1
ProteinID:BAT15828.1	InterPro:DNA_RNA_pol_RPB5_euk/virus	ProteinID:EAZ19600.1	GO:GO:0000428	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR035913	InterPro:IPR036710	EnsemblPlantsGene:Os12g0139500
EnsemblPlants:Os12t0139500-01	PFAM:PD005155	PFAM:PF01191	PFAM:PF03871	PIRSF:PIRSF000747	PANTHER:PTHR10535
PANTHER:PTHR10535:SF2	UniProt:Q0IQ77	InterPro:RNA_pol_Rpb5_N	InterPro:RNA_pol_Rpb5_N_sf	InterPro:RNA_pol_subH/Rpb5_C	InterPro:RPB5-like
SUPFAM:SSF53036	SUPFAM:SSF55287	UniParc:UPI0000681A93	RefSeq:XP_015616663.1	SEG:seg	:

Description

DNA-directed RNA polymerase, RPB5 subunit domain containing protein. (Os12t0139500-01)

Coordinates

chr12:-:1917885..1920583

Molecular Weight (calculated)

26048.7 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.213

Length

227 amino acids

Sequence
(BLAST)

001: MAAEMEVDDV DVHEVPECIA SMIDRGSVES HRLFLARRTA MEMLRDRGYS VPEAEIARTL PEFRAWWAEK PGIERLAFTT TLVSDPSKKV QLVFCPPEPV
101: KIATIREIYL QTKEENLSRL VLILQSKILS RAREAIKEIF KFKVDIFQAT DLLVNITKHV LKPKHEVLSA DQKAKLLKEY NVEDSQLPRM LETDAVARYY
201: GFDKGTVVKV TYDGELTGKR VAYRCVF

Best Arabidopsis Sequence Match ( AT3G57080.1 )
(BLAST)

001: MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI
101: RSVVADILSQ ETITGLILVL QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK QLPRISKKDA IVRYYGLEKG
201: QVVKVNYRGE LTESHVAFRC VW

Arabidopsis Description

NRPE5ADNA-directed RNA polymerase V subunit 5A [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.